RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA485080" and tax_phylum = "Porifera"

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tax_superkingdom 1

tax_phylum 1

  • Porifera · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA485080 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24675439 24675439 PRJNA485080_P_NODE_7220_length_373_cov_1.026667_g7126_i0 PRJNA485080 7220 373 1.026667 3.82946791 Dysidea avara 196820 Porifera other_Eukaryota 177 4.4e-55   NR XP_065890751.1 196820 g7126 i0 75.5 3.61930294906166 110 25 88.5 1 31 360 1 108 XP_065890751.1 peptidyl-prolyl cis-trans isomerase FKBP1A-like [Dysidea avara] diamond 1350 177 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Dictyoceratida Dysideidae Dysidea Dysidea avara
28907665 28907665 PRJNA485080_P_NODE_14528_length_296_cov_1.381166_g14434_i0 PRJNA485080 14528 296 1.381166 4.08825136 Halichondria panicea 6063 Porifera other_Eukaryota 78.2 2.63e-15   NR XP_064396867.1 6063 g14434 i0 87.2 1.88513513513514 47 6 47.6 0 295 155 159 205 XP_064396867.1 nascent polypeptide-associated complex subunit alpha-like [Halichondria panicea] diamond 558 78.2 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Suberitida Halichondriidae Halichondria Halichondria panicea
31071986 31071986 PRJNA485080_P_NODE_35155_length_245_cov_0.895349_g35061_i0 PRJNA485080 35155 245 0.895349 2.19360505 Opisthokonta 33154 Porifera other_Eukaryota 116 1.1699999999999998e-31   NR XP_065178029.1 27933 g35061 i0 66.3 19.4326530612245 80 27 98 0 245 6 33 112 XP_065178029.1 uncharacterized protein LOC135808728 [Sycon ciliatum] diamond 4761 117 0.991452991452991 Eukaryota Opisthokonta Metazoa Porifera Calcarea Leucosolenida Sycettidae Sycon Sycon ciliatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;