RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA485080" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA485080 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6826879 6826879 PRJNA485080_P_NODE_38046_length_243_cov_1.000000_g37952_i0 PRJNA485080 38046 243 1 2.43 Metazoa 33208 Platyhelminthes Platyhelminthes 96.7 2.3e-23   NR XP_018644101.1 6183 g37952 i0 70 3.08641975308642 70 21 86.4 0 217 8 1 70 XP_018644101.1 hypothetical protein Smp_191100 [Schistosoma mansoni] diamond 750 96.7 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma mansoni
18300966 18300966 PRJNA485080_P_NODE_42535_length_241_cov_0.916667_g42441_i0 PRJNA485080 42535 241 0.916667 2.20916747 Schistosoma mansoni 6183 Platyhelminthes Platyhelminthes 96.7 2.3e-23   NR XP_018644101.1 6183 g42441 i0 63.3 0.983402489626556 79 27 95.9 1 2 232 7 85 XP_018644101.1 hypothetical protein Smp_191100 [Schistosoma mansoni] diamond 237 96.7 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma mansoni
29271114 29271114 PRJNA485080_P_NODE_8769_length_350_cov_0.855596_g8675_i0 PRJNA485080 8769 350 0.855596 2.994586 root 1 Root_unresolved Root_unresolved 49.3 1.93e-4   NR XP_018644101.1 6183 g8675 i0 51.1 1.62 47 21 40.3 1 67 207 3 47 XP_018644101.1 hypothetical protein Smp_191100 [Schistosoma mansoni] diamond 567 49.7 0.991951710261569 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma mansoni
32352864 32352864 PRJNA485080_P_NODE_10979_length_326_cov_1.102767_g10885_i0 PRJNA485080 10979 326 1.102767 3.59502042 Protopolystoma xenopodis 117903 Platyhelminthes Platyhelminthes 46.6 0.0014   NR VEL09888.1 117903 g10885 i0 39.2 0.680981595092024 74 38 65.3 4 64 276 38 107 VEL09888.1 unnamed protein product [Protopolystoma xenopodis] diamond 222 46.6 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Monogenea Polystomatidea Polystomatidae Protopolystoma Protopolystoma xenopodis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;