RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA485080" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 3 ✖

bioproject 1

  • PRJNA485080 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28466057 28466057 PRJNA485080_P_NODE_23986_length_250_cov_0.870056_g23892_i0 PRJNA485080 23986 250 0.870056 2.17514 Cetobacterium 180162 Bacteria Bacteria 142 6.689999999999998e-42   NR WP_047381029.1 180162 g23892 i0 100 0.852 71 0 85.2 0 38 250 1 71 WP_047381029.1 MULTISPECIES: DUF86 domain-containing protein [Cetobacterium] diamond 213 142 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium  
29239803 29239803 PRJNA485080_P_NODE_22549_length_251_cov_0.865169_g22455_i0 PRJNA485080 22549 251 0.865169 2.17157419 root 1 Root_unresolved Root_unresolved 45.4 0.00106   NR WP_222702918.1 859 g22455 i0 51.3 2.78486055776892 39 19 46.6 0 163 47 9 47 WP_222702918.1 hypothetical protein [Fusobacterium necrophorum] diamond 699 45.4 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium necrophorum
30866119 30866119 PRJNA485080_P_NODE_23714_length_250_cov_0.870056_g23620_i0 PRJNA485080 23714 250 0.870056 2.17514 Cetobacterium sp. 2071632 Bacteria Bacteria 52.4 4.42e-6   NR WP_332648652.1 2071632 g23620 i0 46.2 0.624 52 28 62.4 0 165 10 30 81 WP_332648652.1 hypothetical protein [Cetobacterium sp.] diamond 156 52.4 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;