RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA485080" and tax_clade = "Discoba"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 4 ✖

bioproject 1

  • PRJNA485080 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27897424 27897424 PRJNA485080_P_NODE_36765_length_244_cov_0.900585_g36671_i0 PRJNA485080 36765 244 0.900585 2.1974274 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 108 1.43e-25   NR XP_002676895.1 5762 g36671 i0 72 1.00819672131148 82 20 99.6 2 243 1 377 456 XP_002676895.1 uncharacterized protein NAEGRDRAFT_49200 [Naegleria gruberi] diamond 246 108 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
30266162 30266162 PRJNA485080_P_NODE_15792_length_287_cov_1.439252_g15698_i0 PRJNA485080 15792 287 1.439252 4.13065324 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 94.7 6.38e-23   NR XP_002677819.1 5762 g15698 i0 56.1 1.02439024390244 98 31 95.1 4 5 277 9 101 XP_002677819.1 uncharacterized protein NAEGRDRAFT_67079 [Naegleria gruberi] diamond 294 94.7 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
30424274 30424274 PRJNA485080_P_NODE_18093_length_272_cov_1.547739_g17999_i0 PRJNA485080 18093 272 1.547739 4.20985008 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 141 7.95e-39   NR XP_002675987.1 5762 g17999 i0 73.3 0.992647058823529 90 23 99.3 1 3 272 50 138 XP_002675987.1 uncharacterized protein NAEGRDRAFT_68955 [Naegleria gruberi] diamond 270 141 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
30613309 30613309 PRJNA485080_P_NODE_41073_length_242_cov_0.911243_g40979_i0 PRJNA485080 41073 242 0.911243 2.20520806 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 91.3 3.05e-19   NR XP_002671249.1 5762 g40979 i0 66.7 1.00413223140496 81 25 99.2 2 242 3 166 245 XP_002671249.1 uncharacterized protein NAEGRDRAFT_59502 [Naegleria gruberi] diamond 243 91.3 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;