RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA485080" and tax_clade = "Cyanobacteriota/Melainabacteria group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Cyanobacteriota/Melainabacteria group · 2 ✖

bioproject 1

  • PRJNA485080 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27455713 27455713 PRJNA485080_P_NODE_28303_length_248_cov_0.880000_g28209_i0 PRJNA485080 28303 248 0.88 2.1824 Cyanobacteria bacterium SZAS LIN-3 2807732 Bacteria Bacteria 132 8.01e-34   NR MBS1991750.1 2807732 g28209 i0 72 0.991935483870968 82 23 99.2 0 3 248 328 409 MBS1991750.1 amylo-alpha-1,6-glucosidase [Cyanobacteria bacterium SZAS LIN-3] diamond 246 132 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota         Cyanobacteria bacterium SZAS LIN-3
28971117 28971117 PRJNA485080_P_NODE_22648_length_251_cov_0.865169_g22554_i0 PRJNA485080 22648 251 0.865169 2.17157419 Spirulina major 270636 Bacteria Bacteria 46.6 0.0018   NR WP_072619508.1 270636 g22554 i0 42.9 0.669322709163347 56 29 63.3 1 168 10 255 310 WP_072619508.1 putative baseplate assembly protein [Spirulina major] diamond 168 46.6 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Spirulinales Spirulinaceae Spirulina Spirulina major

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;