RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA485080" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJNA485080 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17026590 17026590 PRJNA485080_P_NODE_39834_length_243_cov_0.894118_g39740_i0 PRJNA485080 39834 243 0.894118 2.17270674 Patescibacteria group bacterium 2052139 Bacteria Bacteria 154 9.74e-45   NR HSI99782.1 2052139 g39740 i0 96.3 1 81 3 100 0 1 243 60 140 HSI99782.1 hypothetical protein [Patescibacteria group bacterium] diamond 243 154 1 Bacteria Bacteria candidate phyla             Patescibacteria group bacterium
27202543 27202543 PRJNA485080_P_NODE_39522_length_243_cov_0.905882_g39428_i0 PRJNA485080 39522 243 0.905882 2.20129326 Patescibacteria group bacterium 2052139 Bacteria Bacteria 47.4 6.34e-4   NR MDE2106937.1 2052139 g39428 i0 36.9 0.802469135802469 65 35 80.2 2 3 197 133 191 MDE2106937.1 hypothetical protein [Patescibacteria group bacterium] diamond 195 47.4 1 Bacteria Bacteria candidate phyla             Patescibacteria group bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;