RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA484127" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA484127 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29665305 29665305 PRJNA484127_P_NODE_10430_length_376_cov_3.745875_g10281_i0 PRJNA484127 10430 376 3.745875 14.08449 Candidatus Limnocylindrales bacterium 2952938 Bacteria Bacteria 99.4 2.5900000000000003e-21   NR HLX33943.1 2952938 g10281 i0 42.3 1.09308510638298 137 55 94.1 5 376 23 84 215 HLX33943.1 hypothetical protein [Candidatus Limnocylindrales bacterium] diamond 411 99.4 1 Bacteria   Bacillati Chloroflexota Candidatus Limnocylindria Candidatus Limnocylindrales     Candidatus Limnocylindrales bacterium
30897906 30897906 PRJNA484127_P_NODE_20154_length_294_cov_1.393665_g20005_i0 PRJNA484127 20154 294 1.393665 4.0973751 Chloroflexota bacterium 2026724 Bacteria Bacteria 46.6 0.003   NR TMC73509.1 2026724 g20005 i0 70.4 0.561224489795918 27 6 27.6 1 197 277 50 74 TMC73509.1 MAG: hypothetical protein E6J18_02425 [Chloroflexota bacterium] diamond 165 46.6 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;