RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA484127" and tax_kingdom = "Methanobacteriati"

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tax_superkingdom 1

tax_kingdom 1

  • Methanobacteriati · 3 ✖

bioproject 1

  • PRJNA484127 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26823272 26823272 PRJNA484127_P_NODE_33521_length_248_cov_0.891429_g33372_i0 PRJNA484127 33521 248 0.891429 2.21074392 Methanocalculus sp. MSAO_Arc2 2293855 Archaea Archaea 91.3 1.76e-19   NR WP_346865000.1 2293855 g33372 i0 58.8 1.86290322580645 80 29 96.8 1 5 244 81 156 WP_346865000.1 TIGR04084 family radical SAM/SPASM domain-containing protein [Methanocalculus sp. MSAO_Arc2] diamond 462 91.3 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanocalculaceae Methanocalculus Methanocalculus sp. MSAO_Arc2
29696891 29696891 PRJNA484127_P_NODE_39290_length_240_cov_2.886228_g39141_i0 PRJNA484127 39290 240 2.886228 6.9269472 Methanobacterium formicicum 2162 Archaea Archaea 42.4 0.05   NR WP_048085055.1 2162 g39141 i0 41.9 0.5375 43 25 53.8 0 204 76 145 187 WP_048085055.1 ABC-ATPase domain-containing protein [Methanobacterium formicicum] diamond 129 42.4 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium formicicum
30329571 30329571 PRJNA484127_P_NODE_20732_length_290_cov_4.903226_g20583_i0 PRJNA484127 20732 290 4.903226 14.2193554 Thermoplasmata archaeon 1906666 Archaea Archaea 140 3.0600000000000004e-36   NR MEM2900767.1 1906666 g20583 i0 72.8 5.7 92 25 95.2 0 276 1 39 130 MEM2900767.1 pyruvate, phosphate dikinase [Thermoplasmata archaeon] diamond 1653 140 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       Thermoplasmata archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;