RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA484127" and tax_clade = "Discoba"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 3 ✖

bioproject 1

  • PRJNA484127 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17025662 17025662 PRJNA484127_P_NODE_17974_length_307_cov_1.213675_g17825_i0 PRJNA484127 17974 307 1.213675 3.72598225 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 141 1.84e-37   NR CAG4718467.1 5763 g17825 i0 67.6 48.8403908794788 102 33 99.7 0 307 2 179 280 CAG4718467.1 unnamed protein product [Naegleria fowleri] diamond 14994 142 0.992957746478873 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
26823266 26823266 PRJNA484127_P_NODE_27061_length_262_cov_1.650794_g26912_i0 PRJNA484127 27061 262 1.650794 4.32508028 Stygiella incarcerata 1712417 Root_unresolved Root_unresolved 110 3.65e-27   NR ANM86203.1 1712417 g26912 i0 62.1 0.99618320610687 87 33 99.6 0 261 1 195 281 ANM86203.1 60S ribosomal protein L5-2 [Stygiella incarcerata] diamond 261 110 1 Eukaryota Discoba       Jakobida Stygiellidae Stygiella Stygiella incarcerata
27487086 27487086 PRJNA484127_P_NODE_23243_length_278_cov_1.521951_g23094_i0 PRJNA484127 23243 278 1.521951 4.23102378 Acrasis kona 1008807 Heterolobosea other_Eukaryota 77.4 2.44e-15   NR KAL0485049.1 1008807 g23094 i0 42.2 1.93165467625899 90 51 96 1 267 1 1 90 KAL0485049.1 thioredoxin domain-containing protein [Acrasis kona] diamond 537 77.4 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;