RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA484127" and tax_clade = "Apusozoa"

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tax_superkingdom 1

tax_clade 1

  • Apusozoa · 4 ✖

bioproject 1

  • PRJNA484127 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20850195 20850195 PRJNA484127_P_NODE_31297_length_251_cov_0.876404_g31148_i0 PRJNA484127 31297 251 0.876404 2.19977404 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 154 1.02e-41   NR XP_013760732.1 461836 g31148 i0 91.5 10.8286852589641 82 7 98 0 3 248 31 112 XP_013760732.1 V-type proton ATPase catalytic subunit A [Thecamonas trahens ATCC 50062] diamond 2718 154 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
27424165 27424165 PRJNA484127_P_NODE_20163_length_294_cov_1.285068_g20014_i0 PRJNA484127 20163 294 1.285068 3.77809992 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 47 0.00206   NR XP_013756785.1 461836 g20014 i0 54.3 0.663265306122449 35 15 34.7 1 1 102 225 259 XP_013756785.1 paxillin [Thecamonas trahens ATCC 50062] diamond 195 47 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
30802959 30802959 PRJNA484127_P_NODE_32574_length_249_cov_1.363636_g32425_i0 PRJNA484127 32574 249 1.363636 3.39545364 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 44.3 0.0123   NR XP_013757199.1 461836 g32425 i0 31.9 0.831325301204819 69 46 81.9 1 46 249 2761 2829 XP_013757199.1 uncharacterized protein AMSG_05791 [Thecamonas trahens ATCC 50062] diamond 207 44.3 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
31276845 31276845 PRJNA484127_P_NODE_19255_length_299_cov_1.716814_g19106_i0 PRJNA484127 19255 299 1.716814 5.13327386 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 65.5 7.69e-10   NR XP_013760817.1 461836 g19106 i0 47.4 0.973244147157191 97 50 97.3 1 5 295 592 687 XP_013760817.1 alpha-actinin A [Thecamonas trahens ATCC 50062] diamond 291 65.5 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;