RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA482207" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA482207 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26617549 26617549 PRJNA482207_P_NODE_25261_length_246_cov_0.890173_g25151_i0 PRJNA482207 25261 246 0.890173 2.18982558 Myxococcia 32015 Bacteria Bacteria 99.4 2.18e-22   NR HBQ15428.1 2026763 g25151 i0 59.3 3.96341463414634 81 33 98.8 0 4 246 98 178 HBQ15428.1 hypothetical protein [Myxococcales bacterium] diamond 975 99.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
27518670 27518670 PRJNA482207_P_NODE_26963_length_244_cov_0.900585_g26853_i0 PRJNA482207 26963 244 0.900585 2.1974274 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 68.2 4.06e-11   NR MEQ8977066.1 2026735 g26853 i0 43.8 2.95081967213115 80 45 98.4 0 3 242 39 118 MEQ8977066.1 carboxypeptidase regulatory-like domain-containing protein [Deltaproteobacteria bacterium] diamond 720 68.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
27929167 27929167 PRJNA482207_P_NODE_29225_length_242_cov_0.911243_g29115_i0 PRJNA482207 29225 242 0.911243 2.20520806 Myxococcales bacterium 2026763 Bacteria Bacteria 106 9.19e-25   NR MBL8716827.1 2026763 g29115 i0 62.5 0.991735537190083 80 30 99.2 0 240 1 371 450 MBL8716827.1 insulinase family protein [Myxococcales bacterium] diamond 240 106 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;