RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA482207" and tax_phylum = "Minisyncoccota"

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tax_superkingdom 1

tax_phylum 1

  • Minisyncoccota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA482207 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20849697 20849697 PRJNA482207_P_NODE_29237_length_242_cov_0.911243_g29127_i0 PRJNA482207 29237 242 0.911243 2.20520806 Minisyncoccota bacterium 2053589 Bacteria Bacteria 129 1.4599999999999998e-35   NR HEX4799343.1 2053589 g29127 i0 82.1 0.966942148760331 78 14 96.7 0 240 7 38 115 HEX4799343.1 elongation factor Ts [Candidatus Paceibacterota bacterium] diamond 234 129 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
27139091 27139091 PRJNA482207_P_NODE_21862_length_249_cov_0.875000_g21752_i0 PRJNA482207 21862 249 0.875 2.17875 Minisyncoccia bacterium 3120121 Bacteria Bacteria 137 7.31e-39   NR MFT5832353.1 3120121 g21752 i0 78 0.987951807228916 82 18 98.8 0 3 248 56 137 MFT5832353.1 putative alpha/beta hydrolase family esterase [Minisyncoccia bacterium] diamond 246 137 1 Bacteria Bacteria candidate phyla   Minisyncoccota Minisyncoccia       Minisyncoccia bacterium
30455762 30455762 PRJNA482207_P_NODE_23173_length_248_cov_0.880000_g23063_i0 PRJNA482207 23173 248 0.88 2.1824 Minisyncoccota bacterium 2053589 Bacteria Bacteria 43.1 0.0281   NR MDR3548743.1 2053589 g23063 i0 60 0.362903225806452 30 12 36.3 0 43 132 93 122 MDR3548743.1 reverse transcriptase [Candidatus Paceibacterota bacterium] diamond 90 43.1 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;