RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

22 rows where analysis = "diamond", bioproject = "PRJNA482207" and tax_phylum = "Chordata"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chordata · 22 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA482207 · 22 ✖

analysis 1

  • diamond · 22 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26696327 26696327 PRJNA482207_P_NODE_26741_length_244_cov_0.900585_g26631_i0 PRJNA482207 26741 244 0.900585 2.1974274 Grus japonensis 30415 Chordata Chordata 53.1 1.57e-6   NR GAB0204475.1 30415 g26631 i0 60 3.84836065573771 35 14 43 0 135 239 2 36 GAB0204475.1 mitochondrial enolase superfamily member 1 [Grus japonensis] diamond 939 53.1 1 Eukaryota Opisthokonta Metazoa Chordata Aves Gruiformes Gruidae Grus Grus japonensis
27139087 27139087 PRJNA482207_P_NODE_10082_length_329_cov_0.933594_g9972_i0 PRJNA482207 10082 329 0.933594 3.07152426 Zosterops borbonicus 364589 Chordata Chordata 43.1 0.0443   NR TRZ26529.1 364589 g9972 i0 87 0.209726443768997 23 3 21 0 9 77 144 166 TRZ26529.1 hypothetical protein HGM15179_000581 [Zosterops borbonicus] diamond 69 43.1 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Zosteropidae Zosterops Zosterops borbonicus
27455677 27455677 PRJNA482207_P_NODE_19083_length_252_cov_1.005587_g18973_i0 PRJNA482207 19083 252 1.005587 2.53407924 Balaenoptera physalus 9770 Chordata Chordata 57.4 1.17e-7   NR KAB0406035.1 9770 g18973 i0 80.5 0.488095238095238 41 6 46.4 1 117 1 42 82 KAB0406035.1 hypothetical protein E2I00_012731, partial [Balaenoptera physalus] diamond 123 57.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Balaenopteridae Balaenoptera Balaenoptera physalus
28244659 28244659 PRJNA482207_P_NODE_2246_length_613_cov_1.446296_g2146_i0 PRJNA482207 2246 613 1.446296 8.86579448 Hirundo rustica rustica 333673 Chordata Chordata 50.1 9.62e-4   NR RMB94829.1 333673 g2146 i0 69 0.141924959216966 29 9 14.2 0 460 546 9 37 RMB94829.1 hypothetical protein DUI87_28632 [Hirundo rustica rustica] diamond 87 50.1 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Hirundinidae Hirundo Hirundo rustica
28608278 28608278 PRJNA482207_P_NODE_21567_length_249_cov_0.875000_g21457_i0 PRJNA482207 21567 249 0.875 2.17875 Opisthokonta 33154 Chordata Chordata 94 3.32e-20   NR XP_013927877.1 35019 g21457 i0 52.5 24.0120481927711 80 38 96.4 0 248 9 65 144 XP_013927877.1 PREDICTED: stomatin-like protein 2, mitochondrial, partial [Thamnophis sirtalis] diamond 5979 94 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Colubridae Thamnophis Thamnophis sirtalis
28623927 28623927 PRJNA482207_P_NODE_22087_length_249_cov_0.875000_g21977_i0 PRJNA482207 22087 249 0.875 2.17875 Bufotes viridis 30338 Chordata Chordata 50.1 9.05e-5   NR CAK8640893.1 30338 g21977 i0 37 3.87951807228916 81 46 96.4 2 240 1 38 114 CAK8640893.1 Protein ALP1-like [Bufotes viridis] diamond 966 50.1 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis
29113542 29113542 PRJNA482207_P_NODE_25808_length_245_cov_0.895349_g25698_i0 PRJNA482207 25808 245 0.895349 2.19360505 Passeriformes 9126 Chordata Chordata 113 3.2900000000000004e-27   NR RMC21364.1 333673 g25698 i0 71.6 1.98367346938776 81 23 99.2 0 2 244 153 233 RMC21364.1 hypothetical protein DUI87_02226 [Hirundo rustica rustica] diamond 486 113 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Hirundinidae Hirundo Hirundo rustica
29129146 29129146 PRJNA482207_P_NODE_23209_length_248_cov_0.880000_g23099_i0 PRJNA482207 23209 248 0.88 2.1824 Aphelocoma coerulescens 39617 Chordata Chordata 84.7 6.51e-17   NR XP_068853973.1 39617 g23099 i0 59.3 0.979838709677419 81 17 81 2 239 39 526 604 XP_068853973.1 LOW QUALITY PROTEIN: N-acetylmuramoyl-L-alanine amidase-like [Aphelocoma coerulescens] diamond 243 84.7 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Corvidae Aphelocoma Aphelocoma coerulescens
29160775 29160775 PRJNA482207_P_NODE_25649_length_245_cov_0.895349_g25539_i0 PRJNA482207 25649 245 0.895349 2.19360505 Staurois parvus 386267 Chordata Chordata 67 3.14e-12   NR CAI9547784.1 386267 g25539 i0 44.4 0.991836734693878 81 45 99.2 0 1 243 12 92 CAI9547784.1 unnamed protein product, partial [Staurois parvus] diamond 243 67 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
29570829 29570829 PRJNA482207_P_NODE_21930_length_249_cov_0.875000_g21820_i0 PRJNA482207 21930 249 0.875 2.17875 Rangifer tarandus platyrhynchus 3082113 Chordata Chordata 53.9 9.52e-7   NR CAI9156472.1 3082113 g21820 i0 51.9 1.27710843373494 52 25 62.7 0 185 30 44 95 CAI9156472.1 unnamed protein product [Rangifer tarandus platyrhynchus] diamond 318 53.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Rangifer Rangifer tarandus
29602196 29602196 PRJNA482207_P_NODE_24070_length_247_cov_0.885057_g23960_i0 PRJNA482207 24070 247 0.885057 2.18609079 Mycteria americana 33587 Chordata Chordata 47 0.00122   NR KAK4829153.1 33587 g23960 i0 48.8 1.08097165991903 43 22 52.2 0 69 197 144 186 KAK4829153.1 LOW QUALITY PROTEIN: hypothetical protein QYF61_002368, partial [Mycteria americana] diamond 267 47 1 Eukaryota Opisthokonta Metazoa Chordata Aves Ciconiiformes Ciconiidae Mycteria Mycteria americana
29696871 29696871 PRJNA482207_P_NODE_27250_length_244_cov_0.900585_g27140_i0 PRJNA482207 27250 244 0.900585 2.1974274 Hirundo rustica rustica 333673 Chordata Chordata 43.9 0.0135   NR RMB91906.1 333673 g27140 i0 50 0.540983606557377 44 21 54.1 1 21 152 243 285 RMB91906.1 hypothetical protein DUI87_31716 [Hirundo rustica rustica] diamond 132 43.9 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Hirundinidae Hirundo Hirundo rustica
30139075 30139075 PRJNA482207_P_NODE_25232_length_246_cov_0.890173_g25122_i0 PRJNA482207 25232 246 0.890173 2.18982558 Lamprotornis superbus 245042 Chordata Chordata 47 0.00128   NR KAI1242382.1 245042 g25122 i0 90.5 0.25609756097561 21 2 25.6 0 19 81 69 89 KAI1242382.1 hypothetical protein IHE44_0005920 [Lamprotornis superbus] diamond 63 47 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Sturnidae Lamprotornis Lamprotornis superbus
30392674 30392674 PRJNA482207_P_NODE_22773_length_248_cov_0.880000_g22663_i0 PRJNA482207 22773 248 0.88 2.1824 Lepidochelys kempii 8472 Chordata Chordata 55.1 3.41e-7   NR CAM4537019.1 8472 g22663 i0 37.3 0.810483870967742 67 42 81 0 201 1 2 68 CAM4537019.1 unnamed protein product [Lepidochelys kempii] diamond 201 55.1 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Cheloniidae Lepidochelys Lepidochelys kempii
30644808 30644808 PRJNA482207_P_NODE_26753_length_244_cov_0.900585_g26643_i0 PRJNA482207 26753 244 0.900585 2.1974274 Zosterops borbonicus 364589 Chordata Chordata 42 0.0312   NR TRZ18865.1 364589 g26643 i0 50 0.540983606557377 44 22 54.1 0 111 242 53 96 TRZ18865.1 hypothetical protein HGM15179_008289 [Zosterops borbonicus] diamond 132 42 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Zosteropidae Zosterops Zosterops borbonicus
30644809 30644809 PRJNA482207_P_NODE_28273_length_243_cov_0.905882_g28163_i0 PRJNA482207 28273 243 0.905882 2.20129326 Gavia stellata 37040 Chordata Chordata 52.8 4.49e-6   NR XP_009812664.2 37040 g28163 i0 72.7 1.19753086419753 33 9 40.7 0 93 191 100 132 XP_009812664.2 F-box only protein 36-like [Gavia stellata] diamond 291 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Gaviiformes Gaviidae Gavia Gavia stellata
30708130 30708130 PRJNA482207_P_NODE_26914_length_244_cov_0.900585_g26804_i0 PRJNA482207 26914 244 0.900585 2.1974274 Mycteria americana 33587 Chordata Chordata 61.2 4.2e-9   NR KAK4824456.1 33587 g26804 i0 46.8 0.762295081967213 62 32 75 1 204 22 147 208 KAK4824456.1 hypothetical protein QYF61_015834 [Mycteria americana] diamond 186 61.2 1 Eukaryota Opisthokonta Metazoa Chordata Aves Ciconiiformes Ciconiidae Mycteria Mycteria americana
31276832 31276832 PRJNA482207_P_NODE_21515_length_249_cov_0.875000_g21405_i0 PRJNA482207 21515 249 0.875 2.17875 Branchiostoma belcheri 7741 Chordata Chordata 54.7 2.54e-6   NR KAI8495430.1 7741 g21405 i0 42.6 1.44578313253012 61 35 73.5 0 43 225 113 173 KAI8495430.1 hypothetical protein Bbelb_268850 [Branchiostoma belcheri] diamond 360 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
31704242 31704242 PRJNA482207_P_NODE_20837_length_250_cov_0.870056_g20727_i0 PRJNA482207 20837 250 0.870056 2.17514 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 43.9 0.0144   NR XP_053556129.1 8345 g20727 i0 36.8 2.784 76 46 91.2 2 245 18 128 201 XP_053556129.1 uncharacterized protein LOC128647369 [Bombina bombina] diamond 696 43.9 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bombinatoridae Bombina Bombina bombina
32415978 32415978 PRJNA482207_P_NODE_21819_length_249_cov_0.875000_g21709_i0 PRJNA482207 21819 249 0.875 2.17875 Pomatorhinus ruficollis 932028 Chordata Chordata 158 3.12e-46   NR NXY39702.1 932028 g21709 i0 91.6 1 83 7 100 0 1 249 142 224 NXY39702.1 ENV1 protein [Pomatorhinus ruficollis] diamond 249 158 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Timaliidae Pomatorhinus Pomatorhinus ruficollis
32479328 32479328 PRJNA482207_P_NODE_20299_length_250_cov_0.870056_g20189_i0 PRJNA482207 20299 250 0.870056 2.17514 Polypterus senegalus 55291 Chordata Chordata 55.8 9.85e-7   NR KAG2457044.1 55291 g20189 i0 57.6 0.708 59 23 68.4 2 80 250 21 79 KAG2457044.1 TARSH protein, partial [Polypterus senegalus] diamond 177 55.8 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
32605503 32605503 PRJNA482207_P_NODE_20660_length_250_cov_0.870056_g20550_i0 PRJNA482207 20660 250 0.870056 2.17514 Podarcis lilfordi 74358 Chordata Chordata 54.7 2.56e-6   NR CAI5781872.1 74358 g20550 i0 28.4 5.832 81 58 97.2 0 249 7 504 584 CAI5781872.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Podarcis lilfordi] diamond 1458 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Lacertidae Podarcis Podarcis lilfordi

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;