RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA478247" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA478247 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24673870 24673870 PRJNA478247_P_NODE_600_length_569_cov_2.479630_g497_i0 PRJNA478247 600 569 2.47963 14.1090947 Amoeba proteus 5775 Tubulinea other_Eukaryota 296 4.15e-100   NR AAW58116.1 5775 g497 i0 80.2 0.880492091388401 167 33 88 0 502 2 1 167 AAW58116.1 peroxiredoxin, partial [Amoeba proteus] diamond 501 296 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
27613518 27613518 PRJNA478247_P_NODE_1604_length_290_cov_2.172414_g1498_i0 PRJNA478247 1604 290 2.172414 6.3000006 Amoeba proteus 5775 Tubulinea other_Eukaryota 155 3.77e-43   NR AAD37351.1 5775 g1498 i0 75.3 0.962068965517241 93 23 96.2 0 10 288 90 182 AAD37351.1 pepstatin-insensitive carboxyl proteinase 1, partial [Amoeba proteus] diamond 279 155 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
27960668 27960668 PRJNA478247_P_NODE_825_length_459_cov_2.586047_g720_i0 PRJNA478247 825 459 2.586047 11.86995573 Amoeba proteus 5775 Tubulinea other_Eukaryota 104 3.33e-23   NR AAD37351.1 5775 g720 i0 81.3 0.418300653594771 64 12 41.8 0 266 457 6 69 AAD37351.1 pepstatin-insensitive carboxyl proteinase 1, partial [Amoeba proteus] diamond 192 104 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
32888709 32888709 PRJNA478247_P_NODE_2160_length_232_cov_1.487685_g2054_i0 PRJNA478247 2160 232 1.487685 3.4514292 Amoeba proteus 5775 Tubulinea other_Eukaryota 127 5.34e-33   NR AAP88974.1 5775 g2054 i0 77.6 0.982758620689655 76 17 98.3 0 230 3 180 255 AAP88974.1 S-adenosylmethionine synthetase 2 [Amoeba proteus] diamond 228 127 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;