RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA478247" and tax_phylum = "Cyanobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Cyanobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA478247 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10651459 10651459 PRJNA478247_P_NODE_1429_length_316_cov_1.731707_g1323_i0 PRJNA478247 1429 316 1.731707 5.47219412 Cyanobacteriota bacterium 2847862 Bacteria Bacteria 135 2.5899999999999996e-37   NR MEN9568196.1 2847862 g1323 i0 82.9 0.778481012658228 82 14 77.8 0 28 273 158 239 MEN9568196.1 hypothetical protein [Cyanobacteriota bacterium] diamond 246 135 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota         Cyanobacteriota bacterium
32731525 32731525 PRJNA478247_P_NODE_800_length_469_cov_2.181818_g695_i0 PRJNA478247 800 469 2.181818 10.23272642 Pleurocapsa sp. CRU_1_2 2720401 Bacteria Bacteria 63.2 1.35e-8   NR NJO98385.1 2720401 g695 i0 27.7 1.75266524520256 137 97 87.6 1 41 451 61 195 NJO98385.1 hypothetical protein [Pleurocapsa sp. CRU_1_2] diamond 822 63.2 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Pleurocapsales Hyellaceae Pleurocapsa Pleurocapsa sp. CRU_1_2

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;