RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

18 rows where analysis = "diamond", bioproject = "PRJNA478247" and tax_phylum = "Chytridiomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 18 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA478247 · 18 ✖

analysis 1

  • diamond · 18 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1722530 1722530 PRJNA478247_P_NODE_802_length_469_cov_1.759091_g697_i0 PRJNA478247 802 469 1.759091 8.2501367900000009 Synchytrium endobioticum 286115 Fungi Fungi 192 1.1699999999999995e-55   NR TPX42294.1 286115 g697 i0 62.3 1.91257995735608 151 56 95.9 1 20 469 12 162 TPX42294.1 hypothetical protein SeLEV6574_g05679 [Synchytrium endobioticum] diamond 897 192 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Synchytriales Synchytriaceae Synchytrium Synchytrium endobioticum
9375584 9375584 PRJNA478247_P_NODE_368_length_786_cov_4.343461_g285_i0 PRJNA478247 368 786 4.343461 34.13960346 Eukaryota 2759 Fungi Fungi 406 2.15e-140   NR TPX52260.1 286115 g285 i0 77.3 20.3129770992366 255 57 96.9 1 771 10 41 295 TPX52260.1 hypothetical protein SeMB42_g01519 [Synchytrium endobioticum] diamond 15966 410 0.990243902439024 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Synchytriales Synchytriaceae Synchytrium Synchytrium endobioticum
10651464 10651464 PRJNA478247_P_NODE_3429_length_158_cov_1.465116_g3323_i0 PRJNA478247 3429 158 1.465116 2.31488328 Opisthokonta 33154 Fungi Fungi 96.3 2.88e-22   NR KAI9009425.1 109897 g3323 i0 86.5 14.7721518987342 52 7 98.7 0 1 156 140 191 KAI9009425.1 mitochondrial carrier domain-containing protein [Gaertneriomyces semiglobifer] diamond 2334 96.3 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Gaertneriomyces Gaertneriomyces semiglobifer
27092374 27092374 PRJNA478247_P_NODE_862_length_447_cov_4.418660_g757_i0 PRJNA478247 862 447 4.41866 19.7514102 Chytridiomycota 4761 Fungi Fungi 153 7.669999999999999e-45   NR KAI8928609.1 281842 g757 i0 63.9 5.77852348993289 122 44 81.9 0 419 54 4 125 KAI8928609.1 ribosomal protein L23/L15e core domain-containing protein, partial [Entophlyctis helioformis] diamond 2583 154 0.993506493506494 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytriomycetaceae Entophlyctis Entophlyctis helioformis
27265987 27265987 PRJNA478247_P_NODE_923_length_430_cov_3.593516_g817_i0 PRJNA478247 923 430 3.593516 15.4521188 Polychytrium aggregatum 110093 Fungi Fungi 164 3.72e-49   NR XP_052968709.1 110093 g817 i0 66.9 0.823255813953488 118 39 82.3 0 17 370 1 118 XP_052968709.1 ribosomal protein L34e-domain-containing protein [Polychytrium aggregatum] diamond 354 164 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
28008524 28008524 PRJNA478247_P_NODE_925_length_430_cov_2.583541_g819_i0 PRJNA478247 925 430 2.583541 11.1092263 Chytridiomycota 4761 Fungi Fungi 164 1.73e-49   NR KAJ3221447.1 4814 g819 i0 62.7 7.03255813953488 126 47 87.9 0 382 5 1 126 KAJ3221447.1 profilin, required for normal timing of actin polymerization in response to thermal stress [Chytriomyces hyalinus] diamond 3024 164 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytriomycetaceae Chytriomyces Chytriomyces hyalinus
28150275 28150275 PRJNA478247_P_NODE_1145_length_370_cov_3.410557_g1039_i0 PRJNA478247 1145 370 3.410557 12.6190609 Cladochytrium tenue 1604274 Fungi Fungi 60.1 1.21e-7   NR KAJ1567084.1 1604274 g1039 i0 46.7 0.486486486486487 60 30 47 1 35 208 200 259 KAJ1567084.1 hypothetical protein HK405_007235 [Cladochytrium tenue] diamond 180 60.1 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Cladochytriales Cladochytriaceae Cladochytrium Cladochytrium tenue
29065897 29065897 PRJNA478247_P_NODE_748_length_488_cov_2.058824_g643_i0 PRJNA478247 748 488 2.058824 10.04706112 Chytriomyces confervae 246404 Fungi Fungi 50.4 9.15e-4   NR TPX76543.1 246404 g643 i0 34.8 0.799180327868853 66 43 40.6 0 82 279 695 760 TPX76543.1 hypothetical protein CcCBS67573_g02204 [Chytriomyces confervae] diamond 390 50.4 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytriomycetaceae Chytriomyces Chytriomyces confervae
30076155 30076155 PRJNA478247_P_NODE_3412_length_158_cov_2.480620_g3306_i0 PRJNA478247 3412 158 2.48062 3.9193796 Synchytrium endobioticum 286115 Fungi Fungi 97.4 8.169999999999999e-23   NR TPX52260.1 286115 g3306 i0 82.7 9.87341772151899 52 9 98.7 0 156 1 116 167 TPX52260.1 hypothetical protein SeMB42_g01519 [Synchytrium endobioticum] diamond 1560 97.4 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Synchytriales Synchytriaceae Synchytrium Synchytrium endobioticum
30155271 30155271 PRJNA478247_P_NODE_272_length_945_cov_5.341703_g208_i0 PRJNA478247 272 945 5.341703 50.47909335 Chytridiomycetes 451435 Fungi Fungi 472 5.19e-161   NR KAJ3199733.1 109932 g208 i0 71.4 5.86984126984127 311 85 97.5 1 931 11 289 599 KAJ3199733.1 hypothetical protein HDU82_000197 [Entophlyctis luteolus] diamond 5547 472 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytriomycetaceae Entophlyctis Entophlyctis luteolus
30739742 30739742 PRJNA478247_P_NODE_154_length_1186_cov_2.669836_g112_i0 PRJNA478247 154 1186 2.669836 31.66425496 Lobulomycetales sp. 2058121 Fungi Fungi 425 2.87e-139   NR KAL3896030.1 2058121 g112 i0 73.4 0.733558178752108 290 72 72.1 2 5 859 341 630 KAL3896030.1 MAG: hypothetical protein SGCHY_004340 [Lobulomycetales sp.] diamond 870 425 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Lobulomycetales     Lobulomycetales sp.
30819119 30819119 PRJNA478247_P_NODE_314_length_862_cov_4.306122_g241_i0 PRJNA478247 314 862 4.306122 37.11877164 Chytridiomycota 4761 Fungi Fungi 254 9.69e-81   NR XP_016604523.1 645134 g241 i0 59.8 2.56844547563805 244 92 83.9 3 849 127 1 241 XP_016604523.1 40S ribosomal protein S6 [Spizellomyces punctatus DAOM BR117] diamond 2214 254 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus
30945586 30945586 PRJNA478247_P_NODE_2814_length_189_cov_1.950000_g2708_i0 PRJNA478247 2814 189 1.95 3.6855 Fungi 4751 Fungi Fungi 49.7 5.25e-5   NR XP_016604523.1 645134 g2708 i0 62.2 2.9047619047619 45 17 71.4 0 3 137 192 236 XP_016604523.1 40S ribosomal protein S6 [Spizellomyces punctatus DAOM BR117] diamond 549 49.7 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus
31008660 31008660 PRJNA478247_P_NODE_1814_length_264_cov_2.697872_g1708_i0 PRJNA478247 1814 264 2.697872 7.12238208 Fungi 4751 Fungi Fungi 113 9.27e-30   NR KAH9258566.1 1357716 g1708 i0 68.4 7.86363636363636 76 24 86.4 0 36 263 11 86 KAH9258566.1 40S ribosomal protein S16 [Batrachochytrium salamandrivorans] diamond 2076 114 0.991228070175439 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium salamandrivorans
31672561 31672561 PRJNA478247_P_NODE_1557_length_297_cov_1.485075_g1451_i0 PRJNA478247 1557 297 1.485075 4.41067275 Eukaryota 2759 Fungi Fungi 66.6 1.8e-10   NR KAJ3049047.1 64517 g1451 i0 65.2 2.61616161616162 46 16 46.5 0 292 155 16 61 KAJ3049047.1 Carbohydrate esterase 4 protein [Rhizophlyctis rosea] diamond 777 66.6 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophlyctidales Rhizophlyctidaceae Rhizophlyctis Rhizophlyctis rosea
32162852 32162852 PRJNA478247_P_NODE_2238_length_226_cov_2.131980_g2132_i0 PRJNA478247 2238 226 2.13198 4.8182748 Polychytrium aggregatum 110093 Fungi Fungi 67 1.56e-11   NR XP_052969381.1 110093 g2132 i0 59.6 0.623893805309734 47 19 62.4 0 145 5 61 107 XP_052969381.1 Cerato-platanin-domain-containing protein [Polychytrium aggregatum] diamond 141 67 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
32368898 32368898 PRJNA478247_P_NODE_1079_length_386_cov_5.969188_g973_i0 PRJNA478247 1079 386 5.969188 23.04106568 Fungi 4751 Fungi Fungi 129 8.8e-36   NR KAJ3092365.1 2654861 g973 i0 54.4 6.82383419689119 125 52 93.3 2 26 385 1 125 KAJ3092365.1 60S ribosomal protein L27 [Quaeritorhiza haematococci] diamond 2634 130 0.992307692307692 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes   Quaeritorhizaceae Quaeritorhiza Quaeritorhiza haematococci
32527172 32527172 PRJNA478247_P_NODE_3339_length_161_cov_1.712121_g3233_i0 PRJNA478247 3339 161 1.712121 2.75651481 Fungi 4751 Fungi Fungi 77.8 1.91e-16   NR KAI8923218.1 281842 g3233 i0 63.5 1.90062111801242 52 19 96.9 0 157 2 93 144 KAI8923218.1 Ran binding domain-containing protein, partial [Entophlyctis helioformis] diamond 306 78.2 0.994884910485933 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytriomycetaceae Entophlyctis Entophlyctis helioformis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;