RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA478247" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA478247 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29034429 29034429 PRJNA478247_P_NODE_2668_length_198_cov_1.840237_g2562_i0 PRJNA478247 2668 198 1.840237 3.64366926 Streptomyces sp. NPDC 1931 Bacteria Bacteria 78.6 4.9e-15   NR WP_356920268.1 3155599 g2562 i0 60.6 4.93939393939394 66 25 98.5 1 195 1 3 68 WP_356920268.1 flavin-containing monooxygenase [Streptomyces sp. NPDC006372] diamond 978 78.6 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. NPDC006372
29318278 29318278 PRJNA478247_P_NODE_2969_length_179_cov_3.346667_g2863_i0 PRJNA478247 2969 179 3.346667 5.99053393 Goekera deserti 2497753 Bacteria Bacteria 40 0.0477   NR WP_152730834.1 2497753 g2863 i0 46.3 0.687150837988827 41 22 68.7 0 150 28 43 83 WP_152730834.1 putative quinol monooxygenase [Goekera deserti] diamond 123 40 1 Bacteria   Bacillati Actinomycetota Actinomycetes Geodermatophilales Geodermatophilaceae Goekera Goekera deserti
30107780 30107780 PRJNA478247_P_NODE_2132_length_234_cov_2.839024_g2026_i0 PRJNA478247 2132 234 2.839024 6.64331616 Nocardiopsis trehalosi 109329 Bacteria Bacteria 45.1 0.00486   NR WP_067971345.1 109329 g2026 i0 39.3 2.94871794871795 56 34 71.8 0 63 230 37 92 WP_067971345.1 S8 family peptidase [Nocardiopsis trehalosi] diamond 690 45.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Nocardiopsidaceae Nocardiopsis Nocardiopsis trehalosi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;