RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA478247" and tax_clade = "Apusozoa"

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tax_superkingdom 1

tax_clade 1

  • Apusozoa · 2 ✖

bioproject 1

  • PRJNA478247 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2998490 2998490 PRJNA478247_P_NODE_1103_length_380_cov_1.937322_g997_i0 PRJNA478247 1103 380 1.937322 7.3618236 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 207 1.01e-61   NR XP_013757918.1 461836 g997 i0 84.7 8.32105263157895 118 18 93.2 0 355 2 5 122 XP_013757918.1 adenosylhomocysteinase [Thecamonas trahens ATCC 50062] diamond 3162 207 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
28023924 28023924 PRJNA478247_P_NODE_3425_length_158_cov_1.627907_g3319_i0 PRJNA478247 3425 158 1.627907 2.57209306 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 80.9 3.7e-16   NR XP_013760790.1 461836 g3319 i0 71.7 0.873417721518987 46 12 87.3 1 150 13 379 423 XP_013760790.1 uncharacterized protein AMSG_02240 [Thecamonas trahens ATCC 50062] diamond 138 80.9 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;