RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA474911" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA474911 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26696319 26696319 PRJNA474911_P_NODE_8301_length_201_cov_0.914286_g8174_i0 PRJNA474911 8301 201 0.914286 1.83771486 Acrasis kona 1008807 Heterolobosea other_Eukaryota 106 6.38e-28   NR KAL0481688.1 1008807 g8174 i0 82.8 0.955223880597015 64 11 95.5 0 5 196 30 93 KAL0481688.1 ribosomal protein S25 [Acrasis kona] diamond 192 106 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona
27392484 27392484 PRJNA474911_P_NODE_8043_length_202_cov_1.815603_g7916_i0 PRJNA474911 8043 202 1.815603 3.66751806 Acrasis kona 1008807 Heterolobosea other_Eukaryota 110 8.160000000000001e-29   NR KAL0481392.1 1008807 g7916 i0 77.6 3.93564356435644 67 15 99.5 0 201 1 3 69 KAL0481392.1 ribosomal protein L44, partial [Acrasis kona] diamond 795 110 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona
29428960 29428960 PRJNA474911_P_NODE_7989_length_203_cov_0.901408_g7862_i0 PRJNA474911 7989 203 0.901408 1.82985824 Naegleria 5761 Heterolobosea other_Eukaryota 52 1.19e-5   NR XP_044561712.1 5763 g7862 i0 49 2.64532019704433 51 26 75.4 0 162 10 71 121 XP_044561712.1 uncharacterized protein FDP41_003652 [Naegleria fowleri] diamond 537 52 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
32463721 32463721 PRJNA474911_P_NODE_7199_length_208_cov_0.870748_g7072_i0 PRJNA474911 7199 208 0.870748 1.81115584 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 86.3 4.46e-19   NR XP_002677106.1 5762 g7072 i0 60 1.99038461538462 70 27 99.5 1 207 1 96 165 XP_002677106.1 uncharacterized protein NAEGRDRAFT_83145 [Naegleria gruberi] diamond 414 87 0.991954022988506 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;