contig_metadata
4 rows where analysis = "diamond", bioproject = "PRJNA474911" and tax_phylum = "Chordata"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1097090 | 1097090 | PRJNA474911_P_NODE_7681_length_205_cov_0.888889_g7554_i0 | PRJNA474911 | 7681 | 205 | 0.888889 | 1.82222245 | Neotoma lepida | 56216 | Chordata | Chordata | 56.6 | 2.5e-7 | NR | OBS77061.1 | 56216 | g7554 | i0 | 71.4 | 24.3219512195122 | 42 | 12 | 61.5 | 0 | 126 | 1 | 4 | 45 | OBS77061.1 hypothetical protein A6R68_16470 [Neotoma lepida] | diamond | 4986 | 56.6 | 1 | Eukaryota | Opisthokonta | Metazoa | Chordata | Mammalia | Rodentia | Cricetidae | Neotoma | Neotoma lepida | |
| 27202496 | 27202496 | PRJNA474911_P_NODE_4022_length_293_cov_0.745690_g3895_i0 | PRJNA474911 | 4022 | 293 | 0.74569 | 2.1848717 | Bufotes viridis | 30338 | Chordata | Chordata | 43.1 | 0.0462 | NR | CAK8629749.1 | 30338 | g3895 | i0 | 69.2 | 0.266211604095563 | 26 | 8 | 26.6 | 0 | 115 | 192 | 335 | 360 | CAK8629749.1 Interleukin-1 receptor type 1 [Bufotes viridis] | diamond | 78 | 43.1 | 1 | Eukaryota | Opisthokonta | Metazoa | Chordata | Amphibia | Anura | Bufonidae | Bufotes | Bufotes viridis | |
| 28829155 | 28829155 | PRJNA474911_P_NODE_6228_length_224_cov_1.570552_g6101_i0 | PRJNA474911 | 6228 | 224 | 1.570552 | 3.51803648 | Cervidae | 9850 | Chordata | Chordata | 47 | 8.85e-4 | NR | XP_043734565.1 | 9860 | g6101 | i0 | 37.8 | 6.83035714285714 | 74 | 45 | 99.1 | 1 | 2 | 223 | 75 | 147 | XP_043734565.1 interferon-induced protein 44 isoform X3 [Cervus elaphus] | diamond | 1530 | 47 | 1 | Eukaryota | Opisthokonta | Metazoa | Chordata | Mammalia | Artiodactyla | Cervidae | Cervus | Cervus elaphus | |
| 30139065 | 30139065 | PRJNA474911_P_NODE_7372_length_207_cov_0.876712_g7245_i0 | PRJNA474911 | 7372 | 207 | 0.876712 | 1.81479384 | Erythrolamprus reginae | 121349 | Chordata | Chordata | 78.2 | 2.17e-16 | NR | XP_070620966.1 | 121349 | g7245 | i0 | 54.5 | 7.7536231884058 | 66 | 30 | 95.7 | 0 | 1 | 198 | 10 | 75 | XP_070620966.1 glia maturation factor gamma [Erythrolamprus reginae] | diamond | 1605 | 78.2 | 1 | Eukaryota | Opisthokonta | Metazoa | Chordata | Lepidosauria | Squamata | Dipsadidae | Erythrolamprus | Erythrolamprus reginae |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;