RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA474911" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA474911 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26918093 26918093 PRJNA474911_P_NODE_7002_length_209_cov_0.864865_g6875_i0 PRJNA474911 7002 209 0.864865 1.80756785 Streptococcus rubneri 1234680 Bacteria Bacteria 139 3.039999999999999e-38   NR WP_195563958.1 1234680 g6875 i0 100 0.976076555023923 68 0 97.6 0 207 4 245 312 WP_195563958.1 hypothetical protein [Streptococcus rubneri] diamond 204 139 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus rubneri
32036117 32036117 PRJNA474911_P_NODE_7938_length_203_cov_0.901408_g7811_i0 PRJNA474911 7938 203 0.901408 1.82985824 Candidatus Mediterraneibacter norwichensis 2838680 Bacteria Bacteria 47 6.74e-4   NR HIV52785.1 2838680 g7811 i0 51 1.49261083743842 49 24 72.4 0 7 153 257 305 HIV52785.1 L-lactate dehydrogenase [Candidatus Mediterraneibacter norwichensis] diamond 303 47 1 Bacteria   Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Mediterraneibacter Candidatus Mediterraneibacter norwichensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;