RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA474426" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA474426 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25323150 25323150 PRJNA474426_P_NODE_30860_length_172_cov_1.260163_g30655_i0 PRJNA474426 30860 172 1.260163 2.16748036 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 73.2 2.62e-13   NR XP_069107631.1 31199 g30655 i0 57.9 3.97674418604651 57 24 99.4 0 1 171 302 358 XP_069107631.1 tyrosine--tRNA ligase, mitochondrial-like [Argopecten irradians] diamond 684 73.2 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pectinida Pectinidae Argopecten Argopecten irradians
27724544 27724544 PRJNA474426_P_NODE_27404_length_185_cov_1.500000_g27199_i0 PRJNA474426 27404 185 1.5 2.775 Metazoa 33208 Mollusca Mollusca 49.7 6.2e-5   NR XP_055860289.1 6526 g27199 i0 47.7 2.85405405405405 44 23 71.4 0 182 51 606 649 XP_055860289.1 uncharacterized protein LOC129921730 [Biomphalaria glabrata] diamond 528 50.1 0.992015968063872 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Planorbidae Biomphalaria Biomphalaria glabrata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;