RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "diamond", bioproject = "PRJNA474426" and tax_phylum = "Candidatus Lithacetigenota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Lithacetigenota · 1 ✖

tax_kingdom 1

bioproject 1

  • PRJNA474426 · 1 ✖

analysis 1

  • diamond · 1 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
32004527 32004527 PRJNA474426_P_NODE_13818_length_281_cov_2.754310_g13613_i0 PRJNA474426 13818 281 2.75431 7.7396111 Candidatus Psychracetigena formicireducens 2986056 Bacteria Bacteria 83.2 2.45e-16   NR MBT9145725.1 2986056 g13613 i0 59 0.65124555160142406 61 25 65.1 0 87 269 10 70 MBT9145725.1 DNA polymerase I [Candidatus Psychracetigena formicireducens] diamond 183 83.2 1 Bacteria   Bacillati Candidatus Lithacetigenota       Candidatus Psychracetigena Candidatus Psychracetigena formicireducens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;