RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA474426" and tax_phylum = "Candidatus Giovannoniibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Giovannoniibacteriota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA474426 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8100498 8100498 PRJNA474426_P_NODE_11347_length_316_cov_1.014981_g11142_i0 PRJNA474426 11347 316 1.014981 3.20733996 Candidatus Giovannonibacteria bacterium GW2 2053557 Bacteria Bacteria 202 4.56e-59   NR KKS96822.1 1618651 g11142 i0 95 0.958860759493671 101 5 95.9 0 305 3 13 113 KKS96822.1 MAG: gyrase subunit B protein [Candidatus Giovannonibacteria bacterium GW2011_GWB1_43_13] diamond 303 202 1 Bacteria Bacteria candidate phyla   Candidatus Giovannoniibacteriota         Candidatus Giovannonibacteria bacterium GW2011_GWB1_43_13
26981282 26981282 PRJNA474426_P_NODE_14842_length_269_cov_2.400000_g14637_i0 PRJNA474426 14842 269 2.4 6.456 Candidatus Giovannonibacteria bacterium GW2 2053557 Bacteria Bacteria 111 2.9e-26   NR KKT61755.1 1618648 g14637 i0 60.8 2.59851301115242 79 31 88.1 0 253 17 123 201 KKT61755.1 MAG: hypothetical protein UW55_C0024G0007 [Candidatus Giovannonibacteria bacterium GW2011_GWA2_44_26] diamond 699 111 1 Bacteria Bacteria candidate phyla   Candidatus Giovannoniibacteriota         Candidatus Giovannonibacteria bacterium GW2011_GWA2_44_26

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;