RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA474426" and tax_phylum = "Candidatus Altimarinota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Altimarinota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA474426 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27865797 27865797 PRJNA474426_P_NODE_7425_length_396_cov_3.040346_g7221_i0 PRJNA474426 7425 396 3.040346 12.03977016 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 194 3.22e-58   NR MBP7823214.1 2044595 g7221 i0 85.4 1.57575757575758 103 15 78 0 6 314 215 317 MBP7823214.1 hypothetical protein [Candidatus Altimarinota bacterium] diamond 624 194 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
28844543 28844543 PRJNA474426_P_NODE_12288_length_301_cov_3.531746_g12083_i0 PRJNA474426 12288 301 3.531746 10.63055546 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 77.8 1.37e-14   NR NRH20661.1 2044595 g12083 i0 89.7 0.777408637873754 39 4 38.9 0 63 179 254 292 NRH20661.1 UTP--glucose-1-phosphate uridylyltransferase [Candidatus Altimarinota bacterium] diamond 234 77.8 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;