RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA474426" and tax_phylum = "Armatimonadota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA474426 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28529188 28529188 PRJNA474426_P_NODE_17787_length_240_cov_4.062827_g17582_i0 PRJNA474426 17787 240 4.062827 9.7507848 Armatimonadota bacterium 2033014 Bacteria Bacteria 61.6 2.18e-10   NR MDO8684464.1 2033014 g17582 i0 53.2 0.775 62 29 77.5 0 200 15 4 65 MDO8684464.1 hypothetical protein [Armatimonadota bacterium] diamond 186 61.6 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
32479308 32479308 PRJNA474426_P_NODE_26939_length_187_cov_1.166667_g26734_i0 PRJNA474426 26939 187 1.166667 2.18166729 Fimbriimonadia bacterium 2575566 Bacteria Bacteria 44.7 0.00362   NR MCW5935642.1 2575566 g26734 i0 31.7 1.94117647058824 63 40 96.3 2 184 5 139 201 MCW5935642.1 hypothetical protein [Fimbriimonadia bacterium] diamond 363 44.7 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia       Fimbriimonadia bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;