RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA474426" and tax_kingdom = "Shotokuvirae"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Shotokuvirae · 2 ✖

bioproject 1

  • PRJNA474426 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29254950 29254950 PRJNA474426_P_NODE_7889_length_384_cov_3.814925_g7684_i0 PRJNA474426 7889 384 3.814925 14.649312 Wigfec virus K19_645 2986016 Viruses Viruses 55.8 2.64e-6   NR UYD39132.1 2986016 g7684 i0 46.2 0.5078125 65 28 50.8 1 176 370 75 132 UYD39132.1 MAG: capsid protein [Wigfec virus K19_645] diamond 195 55.8 1 Viruses   Shotokuvirae Cressdnaviricota         Wigfec virus K19_645
31909588 31909588 PRJNA474426_P_NODE_10097_length_338_cov_1.148789_g9892_i0 PRJNA474426 10097 338 1.148789 3.88290682 Parvoviridae sp. 1940570 Viruses Viruses 115 5.48e-28   NR WAQ80602.1 1940570 g9892 i0 77.5 0.630177514792899 71 15 63 1 291 79 301 370 WAQ80602.1 MAG: replication protein [Parvoviridae sp.] diamond 213 115 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   Parvoviridae sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;