RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA474426" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 3 ✖

bioproject 1

  • PRJNA474426 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29791795 29791795 PRJNA474426_P_NODE_21031_length_217_cov_1.523810_g20826_i0 PRJNA474426 21031 217 1.52381 3.3066677 Deltaproteobacteria bacterium HGW-Deltaproteobacteria-2 2013747 Bacteria Bacteria 101 4.78e-23   NR PKN36610.1 2013747 g20826 i0 70.4 1.963133640553 71 21 98.2 0 215 3 2384 2454 PKN36610.1 MAG: hypothetical protein CVU62_13915 [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-2] diamond 426 101 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium HGW-Deltaproteobacteria-2
30092184 30092184 PRJNA474426_P_NODE_31692_length_169_cov_1.275000_g31487_i0 PRJNA474426 31692 169 1.275 2.15475 Bacteria 2 Bacteria Bacteria 56.2 2.27e-7   NR OGR06462.1 1797902 g31487 i0 50 5.0414201183432 50 25 88.8 0 9 158 309 358 OGR06462.1 MAG: hypothetical protein A2511_03830 [Deltaproteobacteria bacterium RIFOXYD12_FULL_50_9] diamond 852 56.2 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFOXYD12_FULL_50_9
31293015 31293015 PRJNA474426_P_NODE_36495_length_162_cov_0.920354_g36290_i0 PRJNA474426 36495 162 0.920354 1.49097348 Pseudomonadati 3379134 Bacteria Bacteria 55.8 1.05e-7   NR OGP92765.1 1797839 g36290 i0 48.8 3.07407407407407 41 21 75.9 0 141 19 136 176 OGP92765.1 MAG: hypothetical protein A2156_06410 [Deltaproteobacteria bacterium RBG_16_48_10] diamond 498 55.8 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RBG_16_48_10

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;