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contig_metadata

11 rows where analysis = "diamond", bioproject = "PRJNA473824" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 11 ✖

tax_kingdom 1

bioproject 1

  • PRJNA473824 · 11 ✖

analysis 1

  • diamond · 11 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5550548 5550548 PRJNA473824_P_NODE_37905_length_196_cov_4.823899_g37267_i0 PRJNA473824 37905 196 4.823899 9.45484204 Bacteria 2 Bacteria Bacteria 104 4.079999999999999e-24   NR WP_295544573.1 1912772 g37267 i0 72.3 14.9387755102041 65 13 99.5 1 2 196 117 176 WP_295544573.1 type IV secretory system conjugative DNA transfer family protein [Halodesulfovibrio sp.] diamond 2928 104 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Halodesulfovibrio Halodesulfovibrio sp.
11925146 11925146 PRJNA473824_P_NODE_160390_length_151_cov_2.789474_g159752_i0 PRJNA473824 160390 151 2.789474 4.21210574 Desulfobacteraceae bacterium 2049433 Bacteria Bacteria 97.1 2.19e-22   NR RPH50413.1 2049433 g159752 i0 78.6 6.67549668874172 56 6 99.3 1 1 150 72 127 RPH50413.1 MAG: GDP-L-fucose synthase [Desulfobacteraceae bacterium] diamond 1008 97.1 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae   Desulfobacteraceae bacterium
24048414 24048414 PRJNA473824_P_NODE_42159_length_188_cov_2.072848_g41521_i0 PRJNA473824 42159 188 2.072848 3.89695424 Pseudomonadati 3379134 Bacteria Bacteria 113 2.7600000000000004e-27   NR WP_374290838.1 876 g41521 i0 88.7 3.95744680851064 62 7 98.9 0 188 3 355 416 WP_374290838.1 ATP-binding protein [Desulfovibrio desulfuricans] diamond 744 113 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio desulfuricans
27708482 27708482 PRJNA473824_P_NODE_27384_length_227_cov_1.536842_g26746_i0 PRJNA473824 27384 227 1.536842 3.48863134 Candidatus Dadabacteria bacterium 2080303 Bacteria Bacteria 72.4 8.24e-15   NR MCH8014820.1 2080303 g26746 i0 57.6 3.11894273127753 59 24 76.7 1 1 174 12 70 MCH8014820.1 tetratricopeptide repeat protein [Candidatus Dadabacteria bacterium] diamond 708 72.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Candidatus Dadabacteria       Candidatus Dadabacteria bacterium
29475918 29475918 PRJNA473824_P_NODE_66030_length_173_cov_4.213235_g65392_i0 PRJNA473824 66030 173 4.213235 7.28889655 Syntrophobacter fumaroxidans 119484 Bacteria Bacteria 43.9 0.00576   NR WP_011698309.1 119484 g65392 i0 62.5 0.416184971098266 24 9 41.6 0 74 3 348 371 WP_011698309.1 PAS domain S-box protein [Syntrophobacter fumaroxidans] diamond 72 43.9 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophobacteria Syntrophobacterales Syntrophobacteraceae Syntrophobacter Syntrophobacter fumaroxidans
29649753 29649753 PRJNA473824_P_NODE_45630_length_181_cov_14.305556_g44992_i0 PRJNA473824 45630 181 14.305556 25.89305636 Bacteria 2 Bacteria Bacteria 85.1 3.42e-19   NR MDQ1269207.1 2202153 g44992 i0 71.2 7.70718232044199 59 17 97.8 0 179 3 78 136 MDQ1269207.1 rare lipoprotein [Thermodesulfobacteriota bacterium] diamond 1395 85.9 0.990686845168801 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
30613221 30613221 PRJNA473824_P_NODE_143553_length_151_cov_4.649123_g142915_i0 PRJNA473824 143553 151 4.649123 7.02017573 Desulfuromonadales bacterium 2099678 Bacteria Bacteria 43.1 0.00705   NR MBK5275779.1 2099678 g142915 i0 43.5 0.913907284768212 46 26 91.4 0 143 6 14 59 MBK5275779.1 hypothetical protein [Desulfuromonadales bacterium] diamond 138 43.1 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales     Desulfuromonadales bacterium
30676399 30676399 PRJNA473824_P_NODE_32813_length_209_cov_3.151163_g32175_i0 PRJNA473824 32813 209 3.151163 6.58593067 uncultured Desulfovibrio sp. 167968 Bacteria Bacteria 44.7 0.00498   NR WP_296303755.1 167968 g32175 i0 60 0.502392344497608 35 14 50.2 0 106 2 196 230 WP_296303755.1 PcfJ domain-containing protein [uncultured Desulfovibrio sp.] diamond 105 44.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio uncultured Desulfovibrio sp.
32020650 32020650 PRJNA473824_P_NODE_16558_length_292_cov_1.329412_g15920_i0 PRJNA473824 16558 292 1.329412 3.88188304 Pseudomonadati 3379134 Bacteria Bacteria 49.3 3.38e-4   NR MBI5250990.1 2358 g15920 i0 52.4 1.36643835616438 42 20 43.2 0 157 32 360 401 MBI5250990.1 DUF1311 domain-containing protein [Desulfomonile tiedjei] diamond 399 49.7 0.991951710261569 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfomonilia Desulfomonilales Desulfomonilaceae Desulfomonile Desulfomonile tiedjei
32036070 32036070 PRJNA473824_P_NODE_15918_length_298_cov_5.915709_g15280_i0 PRJNA473824 15918 298 5.915709 17.62881282 Halodesulfovibrio spirochaetisodalis 1560234 Bacteria Bacteria 95.1 2.88e-20   NR WP_066856630.1 1560234 g15280 i0 67.2 0.614093959731544 61 20 61.4 0 115 297 1 61 WP_066856630.1 DNA topoisomerase III [Halodesulfovibrio spirochaetisodalis] diamond 183 95.1 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Halodesulfovibrio Halodesulfovibrio spirochaetisodalis
32888686 32888686 PRJNA473824_P_NODE_34640_length_204_cov_3.970060_g34002_i0 PRJNA473824 34640 204 3.97006 8.0989224 Syntrophales bacterium 2928017 Bacteria Bacteria 117 1.19e-28   NR HVO67705.1 2928017 g34002 i0 76.1 0.985294117647059 67 16 98.5 0 4 204 770 836 HVO67705.1 PAS domain S-box protein [Syntrophales bacterium] diamond 201 117 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales     Syntrophales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;