RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA473824" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA473824 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28671518 28671518 PRJNA473824_P_NODE_137067_length_151_cov_8.447368_g136429_i0 PRJNA473824 137067 151 8.447368 12.75552568 Turneriella 338321 Bacteria Bacteria 66.2 5.45e-11   NR MBL8032680.1 2026757 g136429 i0 52.3 5.22516556291391 88 4 99.3 1 151 2 227 314 MBL8032680.1 HAD-IC family P-type ATPase [Leptospiraceae bacterium] diamond 789 66.6 0.993993993993994 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae   Leptospiraceae bacterium
31593424 31593424 PRJNA473824_P_NODE_150256_length_151_cov_3.736842_g149618_i0 PRJNA473824 150256 151 3.736842 5.64263142 Treponema sp. OMZ 799 2563668 Bacteria Bacteria 68.6 2.86e-12   NR WP_253710703.1 2563668 g149618 i0 46.2 4.64900662251656 78 14 99.3 1 151 2 33 110 WP_253710703.1 DNA alkylation repair protein [Treponema sp. OMZ 799] diamond 702 68.6 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp. OMZ 799
31988902 31988902 PRJNA473824_P_NODE_96258_length_173_cov_2.838235_g95620_i0 PRJNA473824 96258 173 2.838235 4.91014655 Bacteria 2 Bacteria Bacteria 55.5 4.68e-7   NR MCL2318959.1 166 g95620 i0 100 73.2658959537572 25 0 43.4 0 98 172 96 120 MCL2318959.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase [Treponema sp.] diamond 12675 55.5 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;