RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA473824" and tax_kingdom = "Thermoproteati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Thermoproteati · 6 ✖

bioproject 1

  • PRJNA473824 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26743808 26743808 PRJNA473824_P_NODE_20541_length_260_cov_4.035874_g19903_i0 PRJNA473824 20541 260 4.035874 10.4932724 root 1 Root_unresolved Root_unresolved 45.8 0.00338   NR HWY35635.1 2202732 g19903 i0 88.5 1.30384615384615 26 3 30 0 259 182 147 172 HWY35635.1 VCBS repeat-containing protein [Nitrosopumilaceae archaeon] diamond 339 45.8 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae   Nitrosopumilaceae archaeon
27202435 27202435 PRJNA473824_P_NODE_125382_length_164_cov_1.842520_g124744_i0 PRJNA473824 125382 164 1.84252 3.0217328 Nitrososphaerota archaeon 2026795 Archaea Archaea 42 0.0218   NR MDG7000370.1 2026795 g124744 i0 40.4 0.951219512195122 52 28 89.6 1 6 152 161 212 MDG7000370.1 hypothetical protein [Nitrososphaerota archaeon] diamond 156 42 1 Archaea   Thermoproteati Nitrososphaerota         Nitrososphaerota archaeon
27771401 27771401 PRJNA473824_P_NODE_7704_length_495_cov_2.565502_g7120_i0 PRJNA473824 7704 495 2.565502 12.6992349 Candidatus Nitrosotenuis sp. 2507556 Archaea Archaea 136 4.84e-34   NR MEM2159675.1 2507556 g7120 i0 46 2.96363636363636 163 79 97.6 2 484 2 315 470 MEM2159675.1 hypothetical protein [Candidatus Nitrosotenuis sp.] diamond 1467 136 1 Archaea   Thermoproteati Nitrososphaerota       Candidatus Nitrosotenuis Candidatus Nitrosotenuis sp.
27882018 27882018 PRJNA473824_P_NODE_160745_length_151_cov_2.649123_g160107_i0 PRJNA473824 160745 151 2.649123 4.00017573 Thermoproteati 1783275 Archaea Archaea 40.8 0.0499   NR WP_338252097.1 54256 g160107 i0 76 1.41059602649007 25 6 49.7 0 3 77 277 301 WP_338252097.1 amidohydrolase [Pyrodictium abyssi] diamond 213 40.8 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Desulfurococcales Pyrodictiaceae Pyrodictium Pyrodictium abyssi
29318254 29318254 PRJNA473824_P_NODE_63249_length_173_cov_4.477941_g62611_i0 PRJNA473824 63249 173 4.477941 7.74683793 Nitrososphaeraceae archaeon 2169593 Archaea Archaea 57.8 1.13e-8   NR HEY7079367.1 2169593 g62611 i0 51.6 1.10982658959538 64 17 86.7 1 3 152 75 138 HEY7079367.1 hypothetical protein [Nitrososphaeraceae archaeon] diamond 192 57.8 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae   Nitrososphaeraceae archaeon
29444374 29444374 PRJNA473824_P_NODE_160510_length_151_cov_2.754386_g159872_i0 PRJNA473824 160510 151 2.754386 4.15912286 Nitrosopumilaceae archaeon 2202732 Archaea Archaea 97.4 1.19e-22   NR HWY33110.1 2202732 g159872 i0 100 1.98675496688742 50 0 99.3 0 151 2 183 232 HWY33110.1 DUF3375 family protein [Nitrosopumilaceae archaeon] diamond 300 97.4 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae   Nitrosopumilaceae archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;