RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA473824" and tax_clade = "Stenosarchaea group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Stenosarchaea group · 5 ✖

bioproject 1

  • PRJNA473824 · 5 ✖

analysis 1

  • diamond · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27265972 27265972 PRJNA473824_P_NODE_59543_length_173_cov_4.919118_g58905_i0 PRJNA473824 59543 173 4.919118 8.51007414 Halopenitus sp. 1979403 Archaea Archaea 90.1 2.92e-19   NR MFB6235430.1 1979403 g58905 i0 72.3 1.1271676300578 65 10 98.8 1 171 1 111 175 MFB6235430.1 type II secretion system F family protein [Halopenitus sp.] diamond 195 90.1 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halopenitus Halopenitus sp.
29649748 29649748 PRJNA473824_P_NODE_111810_length_173_cov_2.477941_g111172_i0 PRJNA473824 111810 173 2.477941 4.28683793 root 1 Root_unresolved Root_unresolved 42 0.028   NR WP_321507132.1 1005933 g111172 i0 57.6 0.988439306358382 33 14 57.2 0 106 8 1288 1320 WP_321507132.1 PKD domain-containing protein [uncultured Methanoregula sp.] diamond 171 42.4 0.990566037735849 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula uncultured Methanoregula sp.
31656291 31656291 PRJNA473824_P_NODE_26257_length_231_cov_5.438144_g25619_i0 PRJNA473824 26257 231 5.438144 12.56211264 Methanothrix sp. 90426 Archaea Archaea 45.8 0.00258   NR MCX6674574.1 90426 g25619 i0 62.5 0.415584415584416 32 12 41.6 0 6 101 644 675 MCX6674574.1 discoidin domain-containing protein [Methanothrix sp.] diamond 96 45.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix sp.
32447682 32447682 PRJNA473824_P_NODE_38199_length_196_cov_1.716981_g37561_i0 PRJNA473824 38199 196 1.716981 3.36528276 Methanothrix sp. 90426 Archaea Archaea 44.7 0.00325   NR MCK9441979.1 90426 g37561 i0 77.3 1.04081632653061 22 5 33.7 0 1 66 72 93 MCK9441979.1 hypothetical protein [Methanothrix sp.] diamond 204 44.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix sp.
32542566 32542566 PRJNA473824_P_NODE_113319_length_173_cov_2.397059_g112681_i0 PRJNA473824 113319 173 2.397059 4.14691207 Halococcus sp. IIIV-5B 2321230 Archaea Archaea 55.1 2.56e-7   NR WP_120068875.1 2321230 g112681 i0 77.1 1.04046242774566 35 8 60.7 0 2 106 107 141 WP_120068875.1 hypothetical protein [Halococcus sp. IIIV-5B] diamond 180 55.1 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halococcus Halococcus sp. IIIV-5B

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;