contig_metadata
6 rows where analysis = "diamond", bioproject = "PRJNA473824" and tax_clade = "Sar"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27265953 | 27265953 | PRJNA473824_P_NODE_163063_length_150_cov_5.902655_g162425_i0 | PRJNA473824 | 163063 | 150 | 5.902655 | 8.8539825 | Peronospora effusa | 542832 | SAR_Eukaryotes | SAR_Eukaryotes | 68.6 | 8e-12 | NR | RMX68316.1 | 542832 | g162425 | i0 | 77.1 | 0.96 | 48 | 8 | 90 | 1 | 149 | 15 | 632 | 679 | RMX68316.1 hypothetical protein DD238_005319 [Peronospora effusa] | diamond | 144 | 68.6 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Peronospora | Peronospora effusa | ||
| 28339552 | 28339552 | PRJNA473824_P_NODE_40166_length_192_cov_1.006452_g39528_i0 | PRJNA473824 | 40166 | 192 | 1.006452 | 1.93238784 | Phytophthora oleae | 2107226 | SAR_Eukaryotes | SAR_Eukaryotes | 41.6 | 0.0485 | NR | KAL3662092.1 | 2107226 | g39528 | i0 | 45.1 | 1.59375 | 51 | 24 | 79.7 | 1 | 181 | 29 | 156 | 202 | KAL3662092.1 hypothetical protein V7S43_012896 [Phytophthora oleae] | diamond | 306 | 41.6 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Phytophthora | Phytophthora oleae | ||
| 30724224 | 30724224 | PRJNA473824_P_NODE_156954_length_151_cov_3.175439_g156316_i0 | PRJNA473824 | 156954 | 151 | 3.175439 | 4.79491289 | root | 1 | Root_unresolved | Root_unresolved | 46.6 | 7.99e-5 | NR | CDW88592.1 | 5949 | g156316 | i0 | 72 | 1.98675496688742 | 25 | 7 | 49.7 | 0 | 75 | 149 | 53 | 77 | CDW88592.1 UNKNOWN [Stylonychia lemnae] | diamond | 300 | 46.6 | 1 | Eukaryota | Sar | Ciliophora | Spirotrichea | Sporadotrichida | Oxytrichidae | Stylonychia | Stylonychia lemnae | ||
| 31846149 | 31846149 | PRJNA473824_P_NODE_138057_length_151_cov_6.885965_g137419_i0 | PRJNA473824 | 138057 | 151 | 6.885965 | 10.39780715 | Polarella glacialis | 89957 | SAR_Eukaryotes | SAR_Eukaryotes | 47.8 | 1.83e-4 | NR | CAE8607610.1 | 89957 | g137419 | i0 | 84 | 0.496688741721854 | 25 | 4 | 49.7 | 0 | 2 | 76 | 602 | 626 | CAE8607610.1 unnamed protein product, partial [Polarella glacialis] | diamond | 75 | 47.8 | 1 | Eukaryota | Sar | Dinophyceae | Suessiales | Suessiaceae | Polarella | Polarella glacialis | |||
| 32352779 | 32352779 | PRJNA473824_P_NODE_159359_length_151_cov_2.964912_g158721_i0 | PRJNA473824 | 159359 | 151 | 2.964912 | 4.47701712 | Phytophthora cinnamomi | 4785 | SAR_Eukaryotes | SAR_Eukaryotes | 96.7 | 1.09e-21 | NR | XP_067786121.1 | 4785 | g158721 | i0 | 88.9 | 3.21854304635762 | 54 | 2 | 99.3 | 1 | 151 | 2 | 652 | 705 | XP_067786121.1 Ribonucleoside-diphosphate reductase large subunit [Phytophthora cinnamomi] | diamond | 486 | 96.7 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Phytophthora | Phytophthora cinnamomi | ||
| 32873337 | 32873337 | PRJNA473824_P_NODE_63640_length_173_cov_4.433824_g63002_i0 | PRJNA473824 | 63640 | 173 | 4.433824 | 7.67051552 | Stephanodiscaceae | 1365474 | SAR_Eukaryotes | SAR_Eukaryotes | 43.5 | 0.00769 | NR | KAL3803718.1 | 29204 | g63002 | i0 | 80 | 1.30057803468208 | 25 | 5 | 43.4 | 0 | 99 | 173 | 169 | 193 | KAL3803718.1 hypothetical protein HJC23_003772 [Cyclotella cryptica] | diamond | 225 | 43.5 | 1 | Eukaryota | Sar | Bacillariophyta | Coscinodiscophyceae | Stephanodiscales | Stephanodiscaceae | Cyclotella | Cyclotella cryptica |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;