RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA473824" and tax_clade = "Amoebozoa"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA473824 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27012889 27012889 PRJNA473824_P_NODE_170562_length_150_cov_3.159292_g169924_i0 PRJNA473824 170562 150 3.159292 4.738938 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 47 2.84e-4   NR AKT93957.1 5778 g169924 i0 80 0.5 25 5 50 0 75 1 134 158 AKT93957.1 ribosomal protein S2 [Vermamoeba vermiformis] diamond 75 47 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
28150248 28150248 PRJNA473824_P_NODE_57345_length_173_cov_5.264706_g56707_i0 PRJNA473824 57345 173 5.264706 9.10794138 Heterostelium album PN5 2086695 Evosea other_Eukaryota 42.7 0.0147   NR XP_020434382.1 670386 g56707 i0 64 0.433526011560694 25 9 43.4 0 1 75 567 591 XP_020434382.1 signal transducer and activator of transcription family protein [Heterostelium album PN500] diamond 75 42.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
30708063 30708063 PRJNA473824_P_NODE_137654_length_151_cov_7.315789_g137016_i0 PRJNA473824 137654 151 7.315789 11.04684139 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 47 3.41e-4   NR XP_004346007.1 1257118 g137016 i0 84 0.496688741721854 25 4 49.7 0 1 75 379 403 XP_004346007.1 uncharacterized protein ACA1_184090 [Acanthamoeba castellanii str. Neff] diamond 75 47 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;