RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA473799" and tax_phylum = "Vulcanimicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Vulcanimicrobiota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA473799 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29381443 29381443 PRJNA473799_P_NODE_41209_length_248_cov_0.880000_g40935_i0 PRJNA473799 41209 248 0.88 2.1824 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 102 4.039999999999999e-23   NR MFA7481774.1 3107663 g40935 i0 66.7 0.943548387096774 78 26 94.4 0 5 238 1150 1227 MFA7481774.1 DISARM system helicase DrmA [Vulcanimicrobiota bacterium] diamond 234 102 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium
30960983 30960983 PRJNA473799_P_NODE_16074_length_287_cov_1.130841_g15800_i0 PRJNA473799 16074 287 1.130841 3.24551367 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 94.4 1.13e-22   NR MFA5504330.1 3107663 g15800 i0 81 0.606271777003484 58 11 60.6 0 174 1 1 58 MFA5504330.1 helix-turn-helix transcriptional regulator [Vulcanimicrobiota bacterium] diamond 174 94.4 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;