RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

22 rows where analysis = "diamond", bioproject = "PRJNA473799" and tax_phylum = "Verrucomicrobiota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 22 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA473799 · 22 ✖

analysis 1

  • diamond · 22 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1720289 1720289 PRJNA473799_P_NODE_16042_length_287_cov_1.186916_g15768_i0 PRJNA473799 16042 287 1.186916 3.40644892 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 155 6.469999999999999e-45   NR MBN8707784.1 2026799 g15768 i0 83.2 1.98606271777003 95 16 99.3 0 286 2 76 170 MBN8707784.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 570 155 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
6198825 6198825 PRJNA473799_P_NODE_26665_length_265_cov_1.484375_g26391_i0 PRJNA473799 26665 265 1.484375 3.93359375 Pseudomonadati 3379134 Bacteria Bacteria 129 7.38e-33   NR HXI71490.1 2499141 g26391 i0 75.3 5.69433962264151 85 21 96.2 0 1 255 499 583 HXI71490.1 ABC transporter ATP-binding protein [Verrucomicrobiia bacterium] diamond 1509 130 0.992307692307692 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
10649356 10649356 PRJNA473799_P_NODE_29329_length_260_cov_1.352941_g29055_i0 PRJNA473799 29329 260 1.352941 3.5176466 Chthoniobacteraceae bacterium 2811408 Bacteria Bacteria 125 3.75e-31   NR HEV7402098.1 2811408 g29055 i0 73.3 0.992307692307692 86 23 99.2 0 1 258 839 924 HEV7402098.1 vitamin B12 dependent-methionine synthase activation domain-containing protein [Chthoniobacteraceae bacterium] diamond 258 125 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae   Chthoniobacteraceae bacterium
11924065 11924065 PRJNA473799_P_NODE_13770_length_294_cov_2.176471_g13496_i0 PRJNA473799 13770 294 2.176471 6.39882474 Opitutus sp. 1913982 Bacteria Bacteria 189 1.95e-53   NR MCR6657178.1 1913982 g13496 i0 94.8 3.95918367346939 97 5 99 0 293 3 217 313 MCR6657178.1 alanine--tRNA ligase [Opitutus sp.] diamond 1164 189 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Opitutus Opitutus sp.
11924275 11924275 PRJNA473799_P_NODE_29990_length_259_cov_1.129032_g29716_i0 PRJNA473799 29990 259 1.129032 2.92419288 Opitutaceae bacterium 2006848 Bacteria Bacteria 121 1.73e-32   NR HEY1107531.1 2006848 g29716 i0 69.8 0.996138996138996 86 26 99.6 0 2 259 18 103 HEY1107531.1 helix-turn-helix domain-containing protein [Opitutaceae bacterium] diamond 258 121 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
27455615 27455615 PRJNA473799_P_NODE_45763_length_245_cov_0.895349_g45489_i0 PRJNA473799 45763 245 0.895349 2.19360505 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 116 5.95e-32   NR MBE0540196.1 2026799 g45489 i0 71.6 1.81224489795918 74 21 90.6 0 23 244 1 74 MBE0540196.1 type II toxin-antitoxin system RelE/ParE family toxin [Verrucomicrobiota bacterium] diamond 444 116 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
27581657 27581657 PRJNA473799_P_NODE_40364_length_248_cov_0.880000_g40090_i0 PRJNA473799 40364 248 0.88 2.1824 Chthoniobacterales bacterium 2201154 Bacteria Bacteria 140 1.14e-38   NR HSH37339.1 2201154 g40090 i0 87.8 0.991935483870968 82 10 99.2 0 247 2 201 282 HSH37339.1 phosphatidate cytidylyltransferase [Chthoniobacterales bacterium] diamond 246 140 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales     Chthoniobacterales bacterium
27676688 27676688 PRJNA473799_P_NODE_31384_length_256_cov_2.016393_g31110_i0 PRJNA473799 31384 256 2.016393 5.16196608 Chthoniobacteraceae bacterium 2811408 Bacteria Bacteria 144 2.84e-38   NR HEV7406367.1 2811408 g31110 i0 89.4 0.99609375 85 9 99.6 0 1 255 424 508 HEV7406367.1 TolC family protein [Chthoniobacteraceae bacterium] diamond 255 144 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae   Chthoniobacteraceae bacterium
27771348 27771348 PRJNA473799_P_NODE_25824_length_267_cov_1.077320_g25550_i0 PRJNA473799 25824 267 1.07732 2.8764444 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 63.2 3.15e-9   NR MCB1204293.1 2499141 g25550 i0 47.2 0.808988764044944 72 38 80.9 0 263 48 522 593 MCB1204293.1 integrin [Verrucomicrobiia bacterium] diamond 216 63.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
27771353 27771353 PRJNA473799_P_NODE_47784_length_244_cov_0.900585_g47510_i0 PRJNA473799 47784 244 0.900585 2.1974274 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 124 1.59e-32   NR MES2694568.1 2026799 g47510 i0 73.8 0.983606557377049 80 21 98.4 0 3 242 26 105 MES2694568.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 240 124 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
27819070 27819070 PRJNA473799_P_NODE_16624_length_286_cov_0.985915_g16350_i0 PRJNA473799 16624 286 0.985915 2.8197169 Bacteria 2 Bacteria Bacteria 200 2.99e-58   NR MDQ6656158.1 2026799 g16350 i0 87.4 13.9615384615385 95 12 99.7 0 285 1 128 222 MDQ6656158.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 3993 200 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
29397579 29397579 PRJNA473799_P_NODE_46669_length_245_cov_0.895349_g46395_i0 PRJNA473799 46669 245 0.895349 2.19360505 Candidatus Methylacidithermus 2839095 Bacteria Bacteria 52.8 1.11e-5   NR MEY2543018.1 2026799 g46395 i0 54.2 1.15102040816327 48 22 58.8 0 177 34 82 129 MEY2543018.1 two-component system, NarL family, sensor histidine kinase UhpB [Verrucomicrobiota bacterium] diamond 282 53.1 0.994350282485876 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
29507657 29507657 PRJNA473799_P_NODE_44430_length_246_cov_0.890173_g44156_i0 PRJNA473799 44430 246 0.890173 2.18982558 Pedosphaera sp. 2024890 Bacteria Bacteria 149 4.16e-41   NR MDB6016188.1 2024890 g44156 i0 82.7 12.780487804878 81 14 98.8 0 245 3 34 114 MDB6016188.1 amidase, hydantoinase/carbamoylase family [Pedosphaera sp.] diamond 3144 149 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Pedosphaerae Pedosphaerales Pedosphaeraceae Pedosphaera Pedosphaera sp.
29728480 29728480 PRJNA473799_P_NODE_24250_length_270_cov_1.065990_g23976_i0 PRJNA473799 24250 270 1.06599 2.878173 Opitutia bacterium 2026771 Bacteria Bacteria 42.7 0.0499   NR MAL85231.1 2026771 g23976 i0 40.5 0.466666666666667 42 25 46.7 0 27 152 111 152 MAL85231.1 hypothetical protein [Opitutia bacterium] diamond 126 42.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia       Opitutia bacterium
29886788 29886788 PRJNA473799_P_NODE_16091_length_287_cov_1.088785_g15817_i0 PRJNA473799 16091 287 1.088785 3.12481295 Akkermansia sp. 1872421 Bacteria Bacteria 186 3.019999999999999e-55   NR MBR5875722.1 1872421 g15817 i0 90.5 0.993031358885017 95 9 99.3 0 3 287 10 104 MBR5875722.1 ISL3 family transposase [Akkermansia sp.] diamond 285 186 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia sp.
30044514 30044514 PRJNA473799_P_NODE_47811_length_244_cov_0.900585_g47537_i0 PRJNA473799 47811 244 0.900585 2.1974274 Roseimicrobium sp. ORNL1 2711231 Bacteria Bacteria 114 1.43e-27   NR WP_165210582.1 2711231 g47537 i0 63 0.995901639344262 81 30 99.6 0 244 2 401 481 WP_165210582.1 pectate lyase [Roseimicrobium sp. ORNL1] diamond 243 114 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Roseimicrobium Roseimicrobium sp. ORNL1
30139005 30139005 PRJNA473799_P_NODE_45212_length_245_cov_2.116279_g44938_i0 PRJNA473799 45212 245 2.116279 5.18488355 Verrucomicrobiaceae bacterium SCGC AG-212-N21 1799659 Bacteria Bacteria 132 1.13e-33   NR OAI57579.1 1799659 g44938 i0 79.2 0.942857142857143 77 16 94.3 0 13 243 22 98 OAI57579.1 hypothetical protein AYO49_01865 [Verrucomicrobiaceae bacterium SCGC AG-212-N21] diamond 231 132 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium SCGC AG-212-N21
31340145 31340145 PRJNA473799_P_NODE_50156_length_243_cov_0.905882_g49882_i0 PRJNA473799 50156 243 0.905882 2.20129326 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 63.2 2.43e-9   NR MEI7909206.1 2026799 g49882 i0 55.6 1.76543209876543 63 28 77.8 0 189 1 303 365 MEI7909206.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 429 63.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31403569 31403569 PRJNA473799_P_NODE_24916_length_268_cov_2.153846_g24642_i0 PRJNA473799 24916 268 2.153846 5.77230728 Lacunisphaera sp. 1961806 Bacteria Bacteria 134 1.32e-36   NR HEX7632160.1 1961806 g24642 i0 79.3 0.973880597014925 87 18 97.4 0 2 262 187 273 HEX7632160.1 helix-turn-helix domain-containing protein [Lacunisphaera sp.] diamond 261 134 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Lacunisphaera Lacunisphaera sp.
31561739 31561739 PRJNA473799_P_NODE_20776_length_277_cov_1.029412_g20502_i0 PRJNA473799 20776 277 1.029412 2.85147124 Verrucomicrobiaceae bacterium SCGC AG-212-N21 1799659 Bacteria Bacteria 110 1.6499999999999999e-28   NR OAI58087.1 1799659 g20502 i0 68.4 0.823104693140794 76 24 82.3 0 228 1 1 76 OAI58087.1 hypothetical protein AYO49_05870 [Verrucomicrobiaceae bacterium SCGC AG-212-N21] diamond 228 110 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium SCGC AG-212-N21
31925616 31925616 PRJNA473799_P_NODE_43517_length_246_cov_1.601156_g43243_i0 PRJNA473799 43517 246 1.601156 3.93884376 Bacteria 2 Bacteria Bacteria 50.8 5.49e-5   NR MBC8008730.1 2006848 g43243 i0 39 2 82 50 100 0 246 1 347 428 MBC8008730.1 pilus assembly protein PilM [Opitutaceae bacterium] diamond 492 51.2 0.9921875 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
32099300 32099300 PRJNA473799_P_NODE_21538_length_275_cov_1.524752_g21264_i0 PRJNA473799 21538 275 1.524752 4.193068 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 180 3.55e-53   NR MBN8246190.1 2026799 g21264 i0 100 0.992727272727273 91 0 99.3 0 274 2 175 265 MBN8246190.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 273 180 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;