RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA473641" and tax_phylum = "Myxococcota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA473641 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27170816 27170816 PRJNA473641_P_NODE_21002_length_247_cov_0.885057_g20919_i0 PRJNA473641 21002 247 0.885057 2.18609079 Polyangiales bacterium 3034171 Bacteria Bacteria 52 2.15e-5   NR HKU38973.1 3034171 g20919 i0 46.5 0.862348178137652 71 37 86.2 1 33 245 1527 1596 HKU38973.1 thrombospondin type 3 repeat-containing protein [Polyangiales bacterium] diamond 213 52 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales     Polyangiales bacterium
28086775 28086775 PRJNA473641_P_NODE_7925_length_343_cov_0.859259_g7842_i0 PRJNA473641 7925 343 0.859259 2.94725837 Myxococcales bacterium 2026763 Bacteria Bacteria 82 2.5e-16   NR MBX3248653.1 2026763 g7842 i0 48.4 0.813411078717201 93 46 81.3 1 52 330 15 105 MBX3248653.1 HD domain-containing protein [Myxococcales bacterium] diamond 279 82 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
29113522 29113522 PRJNA473641_P_NODE_13408_length_282_cov_1.105263_g13325_i0 PRJNA473641 13408 282 1.105263 3.11684166 Myxococcia 32015 Bacteria Bacteria 75.5 2.98e-14   NR MBE2253089.1 1929279 g13325 i0 47.1 5.36170212765957 85 41 90.4 2 258 4 3 83 MBE2253089.1 NAD(P)H-binding protein [Myxococcus sp.] diamond 1512 75.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus Myxococcus sp.
31498464 31498464 PRJNA473641_P_NODE_16756_length_253_cov_1.283333_g16673_i0 PRJNA473641 16756 253 1.283333 3.24683249 Myxococcales bacterium 2026763 Bacteria Bacteria 61.2 1.01e-8   NR MCA9718706.1 2026763 g16673 i0 41 1.76679841897233 78 44 92.5 2 7 240 143 218 MCA9718706.1 exonuclease domain-containing protein [Myxococcales bacterium] diamond 447 61.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;