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contig_metadata

11 rows where analysis = "diamond", bioproject = "PRJNA473641" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 11 ✖

tax_kingdom 1

bioproject 1

  • PRJNA473641 · 11 ✖

analysis 1

  • diamond · 11 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26649012 26649012 PRJNA473641_P_NODE_22601_length_245_cov_0.895349_g22518_i0 PRJNA473641 22601 245 0.895349 2.19360505 Corynebacterium 1716 Bacteria Bacteria 43.5 0.0198   NR WP_049156964.1 169292 g22518 i0 42.1 2.95102040816327 57 27 66.1 2 235 74 255 308 WP_049156964.1 acyltransferase family protein [Corynebacterium aurimucosum] diamond 723 43.9 0.990888382687927 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium aurimucosum
26934136 26934136 PRJNA473641_P_NODE_19442_length_248_cov_1.760000_g19359_i0 PRJNA473641 19442 248 1.76 4.3648 Bacteria 2 Bacteria Bacteria 42 0.0121   NR WP_283542950.1 1828 g19359 i0 37 1.95967741935484 54 33 64.1 1 31 189 19 72 WP_283542950.1 hypothetical protein, partial [Rhodococcoides fascians] diamond 486 42 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcoides Rhodococcoides fascians
29145300 29145300 PRJNA473641_P_NODE_21189_length_246_cov_1.335260_g21106_i0 PRJNA473641 21189 246 1.33526 3.2847396 Actinomadura 1988 Bacteria Bacteria 109 9.89e-26   NR WP_378284538.1 1994 g21106 i0 61.7 6.9390243902439 81 31 98.8 0 4 246 342 422 WP_378284538.1 long-chain-fatty-acid--CoA ligase [Actinomadura rugatobispora] diamond 1707 110 0.990909090909091 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Thermomonosporaceae Actinomadura Actinomadura rugatobispora
29192093 29192093 PRJNA473641_P_NODE_5749_length_384_cov_1.961415_g5666_i0 PRJNA473641 5749 384 1.961415 7.5318336 Kibdelosporangium sp. 1871182 Bacteria Bacteria 53.1 4.01e-5   NR MET0234599.1 1871182 g5666 i0 33.3 0.9140625 117 60 89.1 4 384 43 471 572 MET0234599.1 DUF4832 domain-containing protein [Kibdelosporangium sp.] diamond 351 53.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Kibdelosporangium Kibdelosporangium sp.
29539182 29539182 PRJNA473641_P_NODE_24230_length_243_cov_0.905882_g24147_i0 PRJNA473641 24230 243 0.905882 2.20129326 Isoptericola hypogeus 300179 Bacteria Bacteria 65.9 2.66e-10   NR WP_344246647.1 300179 g24147 i0 58.3 0.592592592592593 48 19 59.3 1 2 145 932 978 WP_344246647.1 glycoside hydrolase N-terminal domain-containing protein [Isoptericola hypogeus] diamond 144 65.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Promicromonosporaceae Isoptericola Isoptericola hypogeus
29728472 29728472 PRJNA473641_P_NODE_26230_length_236_cov_2.527607_g26147_i0 PRJNA473641 26230 236 2.527607 5.96515252 Solirubrobacterales bacterium 1909295 Bacteria Bacteria 74.3 2.01e-13   NR HEY6654688.1 1909295 g26147 i0 50 2.00847457627119 80 34 99.2 2 236 3 181 256 HEY6654688.1 serine protease [Solirubrobacterales bacterium] diamond 474 74.3 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Solirubrobacterales     Solirubrobacterales bacterium
30013129 30013129 PRJNA473641_P_NODE_4151_length_438_cov_1.123288_g4068_i0 PRJNA473641 4151 438 1.123288 4.92000144 Arthrobacter sp. SX1312 2058896 Bacteria Bacteria 202 9.72e-64   NR WP_219815797.1 2058896 g4068 i0 90.1 0.76027397260274 111 11 76 0 437 105 61 171 WP_219815797.1 pathogenesis-related BetVI family protein, partial [Arthrobacter sp. SX1312] diamond 333 202 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. SX1312
30297844 30297844 PRJNA473641_P_NODE_15192_length_266_cov_1.259067_g15109_i0 PRJNA473641 15192 266 1.259067 3.34911822 Actinomycetota bacterium 2900548 Bacteria Bacteria 77 1.35e-14   NR MAU39469.1 2900548 g15109 i0 44.8 0.981203007518797 87 46 98.1 2 1 261 159 243 MAU39469.1 hypothetical protein [Actinomycetota bacterium] diamond 261 77 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
30392585 30392585 PRJNA473641_P_NODE_13773_length_279_cov_0.917476_g13690_i0 PRJNA473641 13773 279 0.917476 2.55975804 Acidimicrobiia bacterium 2080302 Bacteria Bacteria 98.6 8.31e-24   NR RZV46767.1 2080302 g13690 i0 51.1 3.90322580645161 92 44 97.8 1 7 279 28 119 RZV46767.1 MAG: nuclear transport factor 2 family protein [Acidimicrobiia bacterium] diamond 1089 98.6 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia       Acidimicrobiia bacterium
30739647 30739647 PRJNA473641_P_NODE_18554_length_250_cov_0.870056_g18471_i0 PRJNA473641 18554 250 0.870056 2.17514 Nocardioides sp. 35761 Bacteria Bacteria 44.7 0.00735   NR MEI2712524.1 35761 g18471 i0 28.9 0.996 83 53 92.4 1 12 242 110 192 MEI2712524.1 ECF transporter S component [Nocardioides sp.] diamond 249 44.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides sp.
31846111 31846111 PRJNA473641_P_NODE_22537_length_245_cov_0.895349_g22454_i0 PRJNA473641 22537 245 0.895349 2.19360505 Nocardioidaceae bacterium 1871072 Bacteria Bacteria 88.2 3.8e-18   NR HEX6516495.1 1871072 g22454 i0 59.3 2.95102040816327 81 33 99.2 0 245 3 197 277 HEX6516495.1 phage tail tape measure protein [Nocardioidaceae bacterium] diamond 723 88.2 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae   Nocardioidaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;