RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA473641" and tax_clade = "Haptista"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 2 ✖

bioproject 1

  • PRJNA473641 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4272328 4272328 PRJNA473641_P_NODE_9224_length_325_cov_1.043651_g9141_i0 PRJNA473641 9224 325 1.043651 3.39186575 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 166 1.23e-48   NR ALD47911.1 2903 g9141 i0 74.8 31.6061538461538 107 27 98.8 0 2 322 79 185 ALD47911.1 adaptor protein complex 1 or 2 subunit beta, partial [Emiliania huxleyi] diamond 10272 167 0.994011976047904 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
30644731 30644731 PRJNA473641_P_NODE_26333_length_219_cov_5.828767_g26250_i0 PRJNA473641 26333 219 5.828767 12.76499973 Chrysochromulina tobinii 1460289 Haptophyta other_Eukaryota 48.5 4.98e-5   NR KOO29468.1 1460289 g26250 i0 68.4 0.520547945205479 38 12 52.1 0 9 122 77 114 KOO29468.1 ubiquitin [Chrysochromulina tobinii] diamond 114 48.5 1 Eukaryota Haptista   Haptophyta   Prymnesiales Chrysochromulinaceae Chrysochromulina Chrysochromulina tobinii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;