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contig_metadata

29 rows where analysis = "diamond", bioproject = "PRJNA473201" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 29 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA473201 · 29 ✖

analysis 1

  • diamond · 29 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18295676 18295676 PRJNA473201_P_NODE_55555_length_278_cov_1.273171_g54813_i0 PRJNA473201 55555 278 1.273171 3.53941538 Metazoa 33208 Chordata Chordata 127 4.12e-35   NR CBN08641.1 439822 g54813 i0 64.1 7.95323741007194 92 32 99.3 1 277 2 1 91 CBN08641.1 40S ribosomal protein S18 [Microcosmus squamiger] diamond 2211 128 0.9921875 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Stolidobranchia Pyuridae Microcosmus Microcosmus squamiger
19569997 19569997 PRJNA473201_P_NODE_64936_length_253_cov_1.433333_g64194_i0 PRJNA473201 64936 253 1.433333 3.62633249 Opisthokonta 33154 Chordata Chordata 80.1 1.36e-17   NR EDL29062.1 10090 g64194 i0 51.3 68.4901185770751 78 35 88.9 1 239 15 1 78 EDL29062.1 mCG142398 [Mus musculus] diamond 17328 80.9 0.990111248454882 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
22120760 22120760 PRJNA473201_P_NODE_64678_length_254_cov_1.237569_g63936_i0 PRJNA473201 64678 254 1.237569 3.14342526 Metazoa 33208 Chordata Chordata 93.2 1.91e-20   NR AOM63226.1 7764 g63936 i0 58 1.90157480314961 81 31 95.7 1 249 7 156 233 AOM63226.1 cathepsin L [Eptatretus burgeri] diamond 483 93.2 1 Eukaryota Opisthokonta Metazoa Chordata Myxini Myxiniformes Myxinidae Eptatretus Eptatretus burgeri
22120953 22120953 PRJNA473201_P_NODE_73038_length_247_cov_1.574713_g72296_i0 PRJNA473201 73038 247 1.574713 3.88954111 Squamata 8509 Chordata Chordata 68.2 2.44e-11   NR ETE71629.1 8665 g72296 i0 48.1 1.91902834008097 79 39 96 1 6 242 205 281 ETE71629.1 60S ribosomal protein L6, partial [Ophiophagus hannah] diamond 474 68.6 0.994169096209913 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Elapidae Ophiophagus Ophiophagus hannah
26743791 26743791 PRJNA473201_P_NODE_63381_length_257_cov_1.603261_g62639_i0 PRJNA473201 63381 257 1.603261 4.12038077 Metazoa 33208 Chordata Chordata 62 7.06e-9   NR XP_041066707.1 13397 g62639 i0 33.3 7.90272373540856 84 54 95.7 1 5 250 255 338 XP_041066707.1 uncharacterized protein zgc:152951 [Carcharodon carcharias] diamond 2031 62 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Lamniformes Alopiidae Carcharodon Carcharodon carcharias
26807627 26807627 PRJNA473201_P_NODE_17681_length_473_cov_1.460000_g16939_i0 PRJNA473201 17681 473 1.46 6.9058 Metazoa 33208 Chordata Chordata 80.5 2.8e-14   NR XP_039255346.1 7725 g16939 i0 39.6 6.37420718816068 144 75 86.3 6 2 409 210 349 XP_039255346.1 uncharacterized protein LOC120332209 [Styela clava] diamond 3015 80.5 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Stolidobranchia Styelidae Styela Styela clava
26965754 26965754 PRJNA473201_P_NODE_31882_length_350_cov_2.992780_g31140_i0 PRJNA473201 31882 350 2.99278 10.47473 Opisthokonta 33154 Chordata Chordata 158 5.259999999999999e-47   NR XP_066263347.1 7740 g31140 i0 64.6 5.65714285714286 113 40 96.9 0 348 10 4 116 XP_066263347.1 small ribosomal subunit protein eS26-like isoform X2 [Branchiostoma lanceolatum] diamond 1980 158 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma lanceolatum
27250367 27250367 PRJNA473201_P_NODE_76303_length_246_cov_0.890173_g75561_i0 PRJNA473201 76303 246 0.890173 2.18982558 Psittaciformes 9223 Chordata Chordata 43.5 0.0202   NR XP_012985978.3 13146 g75561 i0 38.9 1.9390243902439 54 26 62.2 2 181 29 79 128 XP_012985978.3 LOW QUALITY PROTEIN: stabilizer of axonemal microtubules 1 [Melopsittacus undulatus] diamond 477 43.5 1 Eukaryota Opisthokonta Metazoa Chordata Aves Psittaciformes Psittaculidae Melopsittacus Melopsittacus undulatus
27865718 27865718 PRJNA473201_P_NODE_67685_length_250_cov_0.870056_g66943_i0 PRJNA473201 67685 250 0.870056 2.17514 Cervus elaphus 9860 Chordata Chordata 63.5 3.37e-10   NR XP_043731961.1 9860 g66943 i0 57.3 0.984 82 28 94.8 3 248 12 14 91 XP_043731961.1 translation initiation factor IF-2-like [Cervus elaphus] diamond 246 63.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Cervus Cervus elaphus
28166269 28166269 PRJNA473201_P_NODE_62225_length_260_cov_1.647059_g61483_i0 PRJNA473201 62225 260 1.647059 4.2823534 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 145 4.1e-42   NR XP_019634937.1 7741 g61483 i0 76.7 18.8653846153846 86 20 99.2 0 258 1 80 165 XP_019634937.1 PREDICTED: ferredoxin-like [Branchiostoma belcheri] diamond 4905 145 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
28370993 28370993 PRJNA473201_P_NODE_35786_length_333_cov_1.088462_g35044_i0 PRJNA473201 35786 333 1.088462 3.62457846 Ranitomeya imitator 111125 Chordata Chordata 59.7 1.18e-7   NR CAJ0933392.1 111125 g35044 i0 63 0.414414414414414 46 15 39.6 1 134 3 53 98 CAJ0933392.1 unnamed protein product [Ranitomeya imitator] diamond 138 59.7 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Dendrobatidae Ranitomeya Ranitomeya imitator
28402601 28402601 PRJNA473201_P_NODE_13766_length_539_cov_1.869099_g13026_i0 PRJNA473201 13766 539 1.869099 10.07444361 Rhincodon typus 259920 Chordata Chordata 142 1.54e-39   NR XP_020383641.1 259920 g13026 i0 62.7 3.48423005565863 118 44 65.7 0 521 168 6 123 XP_020383641.1 60S ribosomal protein L24 [Rhincodon typus] diamond 1878 142 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Orectolobiformes Rhincodontidae Rhincodon Rhincodon typus
28402610 28402610 PRJNA473201_P_NODE_47826_length_297_cov_1.031250_g47084_i0 PRJNA473201 47826 297 1.03125 3.0628125 Staurois parvus 386267 Chordata Chordata 57 1.29e-7   NR CAI9624460.1 386267 g47084 i0 41.4 3.39393939393939 111 44 91.9 6 282 10 1 110 CAI9624460.1 unnamed protein product, partial [Staurois parvus] diamond 1008 57 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
28797471 28797471 PRJNA473201_P_NODE_78187_length_245_cov_0.895349_g77445_i0 PRJNA473201 78187 245 0.895349 2.19360505 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 58.2 1.38e-7   NR XP_038667613.1 7830 g77445 i0 46.7 15.6122448979592 60 31 72.2 1 67 243 7 66 XP_038667613.1 hematopoietic lineage cell-specific protein [Scyliorhinus canicula] diamond 3825 58.5 0.994871794871795 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Carcharhiniformes Scyliorhinidae Scyliorhinus Scyliorhinus canicula
28829127 28829127 PRJNA473201_P_NODE_21608_length_425_cov_0.875000_g20866_i0 PRJNA473201 21608 425 0.875 3.71875 Mammalia 40674 Chordata Chordata 43.5 0.0232   NR XP_030896044.1 9713 g20866 i0 31.9 3.02823529411765 91 51 64.2 3 24 296 15 94 XP_030896044.1 small integral membrane protein 35 isoform X1 [Leptonychotes weddellii] diamond 1287 43.9 0.990888382687927 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Phocidae Leptonychotes Leptonychotes weddellii
29129059 29129059 PRJNA473201_P_NODE_85589_length_241_cov_0.916667_g84847_i0 PRJNA473201 85589 241 0.916667 2.20916747 Branchiostoma belcheri 7741 Chordata Chordata 58.5 9.78e-8   NR XP_019640554.1 7741 g84847 i0 47.8 1.14522821576763 46 24 57.3 0 143 6 454 499 XP_019640554.1 PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC109482311 [Branchiostoma belcheri] diamond 276 58.5 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
29192072 29192072 PRJNA473201_P_NODE_32969_length_345_cov_1.132353_g32227_i0 PRJNA473201 32969 345 1.132353 3.90661785 Ophiophagus hannah 8665 Chordata Chordata 60.1 3.23e-9   NR B6RLX2.1 8665 g32227 i0 70.6 1.2695652173913 34 10 29.6 0 242 343 31 64 B6RLX2.1 RecName: Full=Kunitz-type serine protease inhibitor TCI; AltName: Full=Trypsin and chymotrypsin bi-functional serine protease inhibitor; Short=OH-TCI; Flags: Precursor [Ophiophagus hannah] diamond 438 60.1 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Elapidae Ophiophagus Ophiophagus hannah
29271090 29271090 PRJNA473201_P_NODE_77749_length_245_cov_0.895349_g77007_i0 PRJNA473201 77749 245 0.895349 2.19360505 Chordata 7711 Chordata Chordata 63.5 4.79e-10   NR KAF6400128.1 27622 g77007 i0 42.5 20.4244897959184 87 44 99.2 1 2 244 73 159 KAF6400128.1 ubiquitin C-terminal hydrolase L5 [Molossus molossus] diamond 5004 63.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Molossidae Molossus Molossus molossus
29475839 29475839 PRJNA473201_P_NODE_60390_length_265_cov_1.411458_g59648_i0 PRJNA473201 60390 265 1.411458 3.7403637 Oikopleura dioica 34765 Chordata Chordata 69.3 1.56e-12   NR CAG5109510.1 34765 g59648 i0 55.9 4.63018867924528 59 26 66.8 0 89 265 13 71 CAG5109510.1 Oidioi.mRNA.OKI2018_I69.chr2.g4037.t1.cds [Oikopleura dioica] diamond 1227 69.3 1 Eukaryota Opisthokonta Metazoa Chordata Appendicularia Copelata Oikopleuridae Oikopleura Oikopleura dioica
29507633 29507633 PRJNA473201_P_NODE_76370_length_246_cov_0.890173_g75628_i0 PRJNA473201 76370 246 0.890173 2.18982558 Oikopleura dioica 34765 Chordata Chordata 50.1 9.77e-5   NR CBY34065.1 34765 g75628 i0 35.9 1.1219512195122 92 48 98.8 2 245 3 371 462 CBY34065.1 unnamed protein product [Oikopleura dioica] diamond 276 50.1 1 Eukaryota Opisthokonta Metazoa Chordata Appendicularia Copelata Oikopleuridae Oikopleura Oikopleura dioica
29776363 29776363 PRJNA473201_P_NODE_37551_length_326_cov_0.932806_g36809_i0 PRJNA473201 37551 326 0.932806 3.04094756 Mammalia 40674 Chordata Chordata 70.1 2.39e-11   NR XP_038626061.1 9261 g36809 i0 38.7 24.0552147239264 93 52 81 2 318 55 22 114 XP_038626061.1 heat shock factor protein 2 [Tachyglossus aculeatus] diamond 7842 70.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Monotremata Tachyglossidae Tachyglossus Tachyglossus aculeatus
30123771 30123771 PRJNA473201_P_NODE_63892_length_256_cov_1.262295_g63150_i0 PRJNA473201 63892 256 1.262295 3.2314752 Opisthokonta 33154 Chordata Chordata 79.3 6.01e-16   NR XP_049626856.1 109475 g63150 i0 65 49.32421875 60 21 70.3 0 1 180 111 170 XP_049626856.1 60S ribosomal protein L23a-like [Suncus etruscus] diamond 12627 79.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Eulipotyphla Soricidae Suncus Suncus etruscus
31213199 31213199 PRJNA473201_P_NODE_79815_length_244_cov_0.900585_g79073_i0 PRJNA473201 79815 244 0.900585 2.1974274 Ranitomeya imitator 111125 Chordata Chordata 47.8 5.86e-4   NR CAJ0956274.1 111125 g79073 i0 61.3 0.381147540983607 31 12 38.1 0 94 2 1 31 CAJ0956274.1 unnamed protein product [Ranitomeya imitator] diamond 93 47.8 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Dendrobatidae Ranitomeya Ranitomeya imitator
31530090 31530090 PRJNA473201_P_NODE_83116_length_242_cov_0.911243_g82374_i0 PRJNA473201 83116 242 0.911243 2.20520806 Bufo gargarizans 30331 Chordata Chordata 52.8 1.05e-5   NR XP_044124343.1 30331 g82374 i0 54 5.03305785123967 50 23 62 0 237 88 225 274 XP_044124343.1 ribosome biogenesis protein NOP53 [Bufo gargarizans] diamond 1218 53.1 0.994350282485876 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufo Bufo gargarizans
32115648 32115648 PRJNA473201_P_NODE_75118_length_246_cov_0.890173_g74376_i0 PRJNA473201 75118 246 0.890173 2.18982558 Passeriformes 9126 Chordata Chordata 71.2 2.59e-12   NR XP_068855118.1 39617 g74376 i0 44.7 5.18292682926829 85 38 100 2 246 1 12 90 XP_068855118.1 2-acylglycerol O-acyltransferase 1-like [Aphelocoma coerulescens] diamond 1275 71.2 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Corvidae Aphelocoma Aphelocoma coerulescens
32337241 32337241 PRJNA473201_P_NODE_20839_length_432_cov_1.498607_g20097_i0 PRJNA473201 20839 432 1.498607 6.47398224 Opisthokonta 33154 Chordata Chordata 167 1.41e-50   NR XP_035667477.1 7739 g20097 i0 69.5 42.1736111111111 118 36 81.9 0 420 67 1 118 XP_035667477.1 40S ribosomal protein S17 [Branchiostoma floridae] diamond 18219 167 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
32400448 32400448 PRJNA473201_P_NODE_77359_length_245_cov_0.895349_g76617_i0 PRJNA473201 77359 245 0.895349 2.19360505 Opisthokonta 33154 Chordata Chordata 54.3 2.54e-6   NR CBY10724.1 34765 g76617 i0 56 1.35918367346939 50 17 55.1 1 194 60 176 225 CBY10724.1 unnamed protein product [Oikopleura dioica] diamond 333 54.7 0.992687385740402 Eukaryota Opisthokonta Metazoa Chordata Appendicularia Copelata Oikopleuridae Oikopleura Oikopleura dioica
32684329 32684329 PRJNA473201_P_NODE_78080_length_245_cov_0.895349_g77338_i0 PRJNA473201 78080 245 0.895349 2.19360505 Branchiostoma 7737 Chordata Chordata 96.7 1.3e-21   NR XP_035689996.1 7739 g77338 i0 67.6 2.60816326530612 71 22 85.7 1 3 212 290 360 XP_035689996.1 conditioned medium factor receptor 1-like [Branchiostoma floridae] diamond 639 96.7 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
32873322 32873322 PRJNA473201_P_NODE_83560_length_242_cov_0.911243_g82818_i0 PRJNA473201 83560 242 0.911243 2.20520806 Metazoa 33208 Chordata Chordata 87.4 4.26e-18   NR CAG5104975.1 34765 g82818 i0 56.3 9.94214876033058 71 31 88 0 215 3 43 113 CAG5104975.1 Oidioi.mRNA.OKI2018_I69.chr1.g1721.t1.cds [Oikopleura dioica] diamond 2406 87.4 1 Eukaryota Opisthokonta Metazoa Chordata Appendicularia Copelata Oikopleuridae Oikopleura Oikopleura dioica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;