RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA473201" and tax_clade = "Metamonada"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Metamonada · 2 ✖

bioproject 1

  • PRJNA473201 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30487016 30487016 PRJNA473201_P_NODE_73433_length_247_cov_0.885057_g72691_i0 PRJNA473201 73433 247 0.885057 2.18609079 Anaeramoeba flamelloides 1746091 Root_unresolved Root_unresolved 43.5 0.0207   NR KAJ3434289.1 1746091 g72691 i0 44.9 0.595141700404858 49 27 59.5 0 99 245 420 468 KAJ3434289.1 arf3-interacting protein [Anaeramoeba flamelloides] diamond 147 43.5 1 Eukaryota Metamonada         Anaeramoebidae Anaeramoeba Anaeramoeba flamelloides
30581480 30581480 PRJNA473201_P_NODE_74273_length_247_cov_0.885057_g73531_i0 PRJNA473201 74273 247 0.885057 2.18609079 Giardia intestinalis 5741 Fornicata other_Eukaryota 51.2 3.87e-5   NR XP_001709948.1 5741 g73531 i0 37 0.88663967611336 73 43 85 1 239 30 459 531 XP_001709948.1 High cysteine membrane protein Group 6 [Giardia intestinalis] diamond 219 51.2 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia duodenalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;