RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA459724" and tax_phylum = "Cyanobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Cyanobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA459724 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26917967 26917967 PRJNA459724_P_NODE_5682_length_158_cov_1.077519_g5290_i0 PRJNA459724 5682 158 1.077519 1.70248002 Synechococcaceae bacterium WB9_2_112 2448806 Bacteria Bacteria 58.2 4.2e-8   NR NDC35671.1 2448806 g5290 i0 79.5 0.740506329113924 39 8 74.1 0 37 153 83 121 NDC35671.1 hypothetical protein [Synechococcaceae bacterium WB9_2_112] diamond 117 58.2 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Synechococcales Synechococcaceae   Synechococcaceae bacterium WB9_2_112
29381394 29381394 PRJNA459724_P_NODE_5349_length_168_cov_2.028777_g4957_i0 PRJNA459724 5349 168 2.028777 3.40834536 Sphaerospermopsis sp. 3100406 Bacteria Bacteria 84.3 2.9e-17   NR MEB3151468.1 3100406 g4957 i0 65.5 0.982142857142857 55 19 98.2 0 2 166 567 621 MEB3151468.1 hypothetical protein [Sphaerospermopsis sp.] diamond 165 84.3 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Nostocales Aphanizomenonaceae Sphaerospermopsis Sphaerospermopsis sp.
30013097 30013097 PRJNA459724_P_NODE_5551_length_162_cov_1.646617_g5159_i0 PRJNA459724 5551 162 1.646617 2.66751954 Sphaerospermopsis sp. 3100406 Bacteria Bacteria 65.9 6.92e-12   NR MEB3151458.1 3100406 g5159 i0 84.8 0.611111111111111 33 5 61.1 0 1 99 105 137 MEB3151458.1 hypothetical protein [Sphaerospermopsis sp.] diamond 99 65.9 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Nostocales Aphanizomenonaceae Sphaerospermopsis Sphaerospermopsis sp.
31988874 31988874 PRJNA459724_P_NODE_2818_length_292_cov_2.254753_g2427_i0 PRJNA459724 2818 292 2.254753 6.58387876 Cyanobacteriota/Melainabacteria group 1798711 Bacteria Bacteria 68.2 6.49e-12   NR WLT40567.1 2764086 g2427 i0 51.5 1.36643835616438 66 32 67.8 0 91 288 2 67 WLT40567.1 D-Ala-D-Ala carboxypeptidase family metallohydrolase [Synechocystis sp. B12] diamond 399 68.2 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Synechococcales Merismopediaceae Synechocystis Synechocystis sp. B12

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;