RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA459724" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA459724 · 5 ✖

analysis 1

  • diamond · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26712250 26712250 PRJNA459724_S_NODE_701_length_217_cov_1.912088_g698_i0 PRJNA459724 701 217 1.912088 4.14923096 Aves 8782 Chordata Chordata 92.8 5.19e-20   NR GAB0183756.1 30415 g698 i0 62.7 14.6129032258065 67 25 92.6 0 16 216 410 476 GAB0183756.1 phenylalanine--tRNA ligase, mitochondrial [Grus japonensis] diamond 3171 93.6 0.991452991452991 Eukaryota Opisthokonta Metazoa Chordata Aves Gruiformes Gruidae Grus Grus japonensis
26727549 26727549 PRJNA459724_S_NODE_1081_length_197_cov_2.907407_g1078_i0 PRJNA459724 1081 197 2.907407 5.72759179 Styela clava 7725 Chordata Chordata 57.4 1.33e-7   NR XP_039274724.1 7725 g1078 i0 74.3 1.5989847715736 35 9 53.3 0 178 74 340 374 XP_039274724.1 ribonucleoside-diphosphate reductase subunit M2 B-like isoform X3 [Styela clava] diamond 315 57.4 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Stolidobranchia Styelidae Styela Styela clava
31229590 31229590 PRJNA459724_S_NODE_2975_length_152_cov_2.888889_g2972_i0 PRJNA459724 2975 152 2.888889 4.39111128 Chordata 7711 Chordata Chordata 84.3 1.24e-19   NR PIO15962.1 8400 g2972 i0 79.2 18 48 10 94.7 0 151 8 35 82 PIO15962.1 hypothetical protein AB205_0186000 [Aquarana catesbeiana] diamond 2736 84.3 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Aquarana Aquarana catesbeiana
32605407 32605407 PRJNA459724_S_NODE_900_length_207_cov_4.720930_g897_i0 PRJNA459724 900 207 4.72093 9.7723251 Chrysemys picta bellii 8478 Chordata Chordata 42 0.0429   NR XP_065430770.1 8478 g897 i0 45.7 0.666666666666667 46 25 66.7 0 169 32 164 209 XP_065430770.1 tyrosine-protein kinase Fes/Fps-like [Chrysemys picta bellii] diamond 138 42 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Emydidae Chrysemys Chrysemys picta
32652678 32652678 PRJNA459724_S_NODE_2300_length_162_cov_15.322835_g2297_i0 PRJNA459724 2300 162 15.322835 24.8229927 Metazoa 33208 Chordata Chordata 65.1 1.57e-10   NR XP_039261554.1 7725 g2297 i0 82.4 10.7407407407407 34 6 63 0 161 60 402 435 XP_039261554.1 glutamate-rich WD repeat-containing protein 1-like [Styela clava] diamond 1740 65.1 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Stolidobranchia Styelidae Styela Styela clava

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;