RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA459724" and tax_clade = "Sar"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA459724 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28118329 28118329 PRJNA459724_S_NODE_1245_length_190_cov_6.535484_g1242_i0 PRJNA459724 1245 190 6.535484 12.4174196 Stentor coeruleus 5963 SAR_Eukaryotes SAR_Eukaryotes 54.3 1.67e-7   NR OMJ66709.1 5963 g1242 i0 84 0.394736842105263 25 4 39.5 0 181 107 82 106 OMJ66709.1 hypothetical protein SteCoe_36360 [Stentor coeruleus] diamond 75 54.3 1 Eukaryota Sar   Ciliophora Heterotrichea Heterotrichida Stentoridae Stentor Stentor coeruleus
28718424 28718424 PRJNA459724_S_NODE_3087_length_151_cov_2.120690_g3084_i0 PRJNA459724 3087 151 2.12069 3.2022419 Cyclospora cayetanensis 88456 SAR_Eukaryotes SAR_Eukaryotes 59.3 7.23e-9   NR OEH76901.1 88456 g3084 i0 67.5 4.07284768211921 40 13 79.5 0 138 19 134 173 OEH76901.1 ribosomal protein rpl19 [Cyclospora cayetanensis] diamond 615 59.3 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Cyclospora Cyclospora cayetanensis
28797466 28797466 PRJNA459724_S_NODE_1267_length_190_cov_0.993548_g1264_i0 PRJNA459724 1267 190 0.993548 1.8877412 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 61.6 6.31e-10   NR XP_001027472.3 312017 g1264 i0 53.7 1.29473684210526 41 19 64.7 0 25 147 113 153 XP_001027472.3 hypothetical protein TTHERM_01001220 [Tetrahymena thermophila SB210] diamond 246 62 0.993548387096774 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;