RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA454503" and tax_superkingdom = "Archaea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_kingdom 2

tax_superkingdom 1

  • Archaea · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA454503 · 5 ✖

analysis 1

  • diamond · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5545762 5545762 PRJNA454503_P_NODE_16585_length_287_cov_1.486726_g16256_i0 PRJNA454503 16585 287 1.486726 4.26690362 archaeon 1906665 Archaea Archaea 187 7.490000000000001e-59   NR MCQ2818557.1 1906665 g16256 i0 88 1.92334494773519 92 11 96.2 0 287 12 1 92 MCQ2818557.1 ubiquitin-conjugating enzyme E2 [archaeon] diamond 552 187 1 Archaea               archaeon
12572757 12572757 PRJNA454503_P_NODE_75350_length_205_cov_0.902778_g75021_i0 PRJNA454503 75350 205 0.902778 1.8506949 Nitrososphaeraceae archaeon 2169593 Archaea Archaea 95.9 2.07e-24   NR MDF2782721.1 2169593 g75021 i0 96 2.18048780487805 50 2 73.2 0 205 56 5 54 MDF2782721.1 secB [Nitrososphaeraceae archaeon] diamond 447 95.9 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae   Nitrososphaeraceae archaeon
28970962 28970962 PRJNA454503_P_NODE_14248_length_304_cov_2.366255_g13919_i0 PRJNA454503 14248 304 2.366255 7.1934152 Methanoregulaceae archaeon 2485498 Archaea Archaea 44.7 0.0145   NR HNO08674.1 2485498 g13919 i0 33.8 0.671052631578947 68 45 67.1 0 239 36 129 196 HNO08674.1 PKD domain-containing protein [Methanoregulaceae archaeon] diamond 204 44.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae   Methanoregulaceae archaeon
30202295 30202295 PRJNA454503_P_NODE_62772_length_209_cov_0.878378_g62443_i0 PRJNA454503 62772 209 0.878378 1.83581002 archaeon 1906665 Archaea Archaea 70.1 3.24e-12   NR MFA5931580.1 1906665 g62443 i0 64.2 0.760765550239234 53 17 76.1 1 162 4 3 53 MFA5931580.1 4-hydroxy-tetrahydrodipicolinate synthase [archaeon] diamond 159 70.1 1 Archaea               archaeon
31719678 31719678 PRJNA454503_P_NODE_69357_length_207_cov_0.890411_g69028_i0 PRJNA454503 69357 207 0.890411 1.84315077 Fervidicoccus sp. 2060324 Archaea Archaea 44.3 0.00502   NR PNV80394.1 2060324 g69028 i0 53.2 1.2463768115942 47 21 68.1 1 32 172 10 55 PNV80394.1 MAG: thymidine kinase [Fervidicoccus sp.] diamond 258 44.3 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Fervidicoccales Fervidicoccaceae Fervidicoccus Fervidicoccus sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;