RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA454503" and tax_phylum = "candidate division WOR-3"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • candidate division WOR-3 · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA454503 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27771304 27771304 PRJNA454503_P_NODE_79224_length_204_cov_0.909091_g78895_i0 PRJNA454503 79224 204 0.909091 1.85454564 candidate division WOR-3 bacterium 2052148 Bacteria Bacteria 42 0.0418   NR NPV13357.1 2052148 g78895 i0 38.5 0.764705882352941 52 30 73.5 1 182 33 279 330 NPV13357.1 hypothetical protein [candidate division WOR-3 bacterium] diamond 156 42 1 Bacteria Bacteria candidate phyla   candidate division WOR-3         candidate division WOR-3 bacterium
30771420 30771420 PRJNA454503_P_NODE_9654_length_360_cov_1.334448_g9325_i0 PRJNA454503 9654 360 1.334448 4.8040128 candidate division WOR-3 bacterium 2052148 Bacteria Bacteria 50.1 7.2e-5   NR MBN1151167.1 2052148 g9325 i0 47.4 0.316666666666667 38 20 31.7 0 308 195 36 73 MBN1151167.1 cytochrome b5 domain-containing protein [candidate division WOR-3 bacterium] diamond 114 50.1 1 Bacteria Bacteria candidate phyla   candidate division WOR-3         candidate division WOR-3 bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;