RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA454503" and tax_phylum = "Mucoromycota"

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tax_superkingdom 1

tax_phylum 1

  • Mucoromycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA454503 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27123640 27123640 PRJNA454503_P_NODE_76782_length_204_cov_1.818182_g76453_i0 PRJNA454503 76782 204 1.818182 3.70909128 Fungi 4751 Fungi Fungi 97.1 1.7400000000000003e-21   NR RIA95047.1 658196 g76453 i0 64.7 12 68 24 100 0 204 1 291 358 RIA95047.1 asparaginase-domain-containing protein [Glomus cerebriforme] diamond 2448 97.1 1 Eukaryota Opisthokonta Fungi Mucoromycota Glomeromycetes Glomerales Glomeraceae Glomus Glomus cerebriforme
27882001 27882001 PRJNA454503_P_NODE_61085_length_209_cov_0.878378_g60756_i0 PRJNA454503 61085 209 0.878378 1.83581002 root 1 Root_unresolved Root_unresolved 111 1.7300000000000003e-27   NR KAI9314046.1 101130 g60756 i0 77.9 5.84210526315789 68 15 97.6 0 208 5 263 330 KAI9314046.1 glyceraldehyde-3-phosphate dehydrogenase [Dichotomocladium elegans] diamond 1221 111 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Lichtheimiaceae Dichotomocladium Dichotomocladium elegans
30850594 30850594 PRJNA454503_P_NODE_28774_length_241_cov_1.444444_g28445_i0 PRJNA454503 28774 241 1.444444 3.48111004 Fungi 4751 Fungi Fungi 109 4.6e-29   NR KAL0088032.1 4837 g28445 i0 80.9 47.0290456431535 68 13 84.6 0 235 32 39 106 KAL0088032.1 40S ribosomal protein S28-like protein [Phycomyces blakesleeanus] diamond 11334 109 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Phycomycetaceae Phycomyces Phycomyces blakesleeanus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;