RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA454503" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA454503 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28465889 28465889 PRJNA454503_P_NODE_82566_length_203_cov_0.915493_g82237_i0 PRJNA454503 82566 203 0.915493 1.85845079 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 72 1.04e-12   NR XP_002680730.1 5762 g82237 i0 56.5 0.916256157635468 62 27 91.6 0 3 188 291 352 XP_002680730.1 uncharacterized protein NAEGRDRAFT_63893 [Naegleria gruberi] diamond 186 72 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
28640019 28640019 PRJNA454503_P_NODE_88587_length_194_cov_2.451128_g88258_i0 PRJNA454503 88587 194 2.451128 4.75518832 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 82.8 2.72e-18   NR XP_002669477.1 5762 g88258 i0 67.3 5.28865979381443 49 16 75.8 0 45 191 76 124 XP_002669477.1 uncharacterized protein NAEGRDRAFT_75564 [Naegleria gruberi] diamond 1026 83.6 0.990430622009569 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
29665178 29665178 PRJNA454503_P_NODE_70870_length_206_cov_0.896552_g70541_i0 PRJNA454503 70870 206 0.896552 1.84689712 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 137 1.34e-36   NR XP_002672214.1 5762 g70541 i0 85.3 0.990291262135922 68 10 99 0 1 204 255 322 XP_002672214.1 uncharacterized protein NAEGRDRAFT_52379 [Naegleria gruberi] diamond 204 137 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
30234116 30234116 PRJNA454503_P_NODE_34392_length_234_cov_1.098266_g34063_i0 PRJNA454503 34392 234 1.098266 2.56994244 Naegleria lovaniensis 51637 Heterolobosea other_Eukaryota 69.7 1.01e-11   NR XP_044543911.1 51637 g34063 i0 39.5 1.96153846153846 76 42 97.4 1 232 5 317 388 XP_044543911.1 uncharacterized protein C9374_010481 [Naegleria lovaniensis] diamond 459 69.7 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis
30834435 30834435 PRJNA454503_P_NODE_81214_length_203_cov_0.915493_g80885_i0 PRJNA454503 81214 203 0.915493 1.85845079 Naegleria lovaniensis 51637 Heterolobosea other_Eukaryota 52.4 8.8e-6   NR XP_044546350.1 51637 g80885 i0 80 0.517241379310345 35 7 51.7 0 203 99 781 815 XP_044546350.1 uncharacterized protein C9374_007726 [Naegleria lovaniensis] diamond 105 52.4 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;