RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA454503" and tax_phylum = "Gemmatimonadota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA454503 · 5 ✖

analysis 1

  • diamond · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
442557 442557 PRJNA454503_P_NODE_50561_length_215_cov_1.441558_g50232_i0 PRJNA454503 50561 215 1.441558 3.0993497 Longimicrobium sp. 2029185 Bacteria Bacteria 128 2.27e-32   NR HEX8673179.1 2029185 g50232 i0 87.3 0.990697674418605 71 9 99.1 0 1 213 125 195 HEX8673179.1 hypothetical protein [Longimicrobium sp.] diamond 213 128 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
8095666 8095666 PRJNA454503_P_NODE_49647_length_216_cov_1.432258_g49318_i0 PRJNA454503 49647 216 1.432258 3.09367728 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 91.7 1.56e-19   NR HEY9506457.1 2448054 g49318 i0 58.3 5 72 30 100 0 216 1 39 110 HEY9506457.1 proton-conducting transporter membrane subunit [Gemmatimonadales bacterium] diamond 1080 91.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
28023780 28023780 PRJNA454503_P_NODE_71945_length_206_cov_0.896552_g71616_i0 PRJNA454503 71945 206 0.896552 1.84689712 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 57.8 1.14e-7   NR HSE45865.1 2448054 g71616 i0 43.8 2.79611650485437 64 34 93.2 1 204 13 48 109 HSE45865.1 hypothetical protein [Gemmatimonadales bacterium] diamond 576 57.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
29776357 29776357 PRJNA454503_P_NODE_20331_length_267_cov_1.262136_g20002_i0 PRJNA454503 20331 267 1.262136 3.36990312 Bacteria 2 Bacteria Bacteria 53.5 7.86e-6   NR MFQ5678369.1 2026742 g20002 i0 46 4.10112359550562 63 28 66.3 3 2 178 745 805 MFQ5678369.1 leishmanolysin-related zinc metalloendopeptidase [Gemmatimonadota bacterium] diamond 1095 53.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
32099258 32099258 PRJNA454503_P_NODE_84398_length_202_cov_0.921986_g84069_i0 PRJNA454503 84398 202 0.921986 1.86241172 Longimicrobium sp. 2029185 Bacteria Bacteria 124 5.29e-31   NR HEV7588876.1 2029185 g84069 i0 88.7 0.920792079207921 62 7 92.1 0 202 17 430 491 HEV7588876.1 lantibiotic dehydratase [Longimicrobium sp.] diamond 186 124 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;