RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA454503" and tax_phylum = "Annelida"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Annelida · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA454503 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8095781 8095781 PRJNA454503_P_NODE_58127_length_210_cov_0.872483_g57798_i0 PRJNA454503 58127 210 0.872483 1.8322143 Opisthokonta 33154 Annelida Annelida 107 8.61e-27   NR XP_009024801.1 6412 g57798 i0 84.4 39.9 64 10 91.4 0 208 17 8 71 XP_009024801.1 hypothetical protein HELRODRAFT_155141 [Helobdella robusta] diamond 8379 107 1 Eukaryota Opisthokonta Metazoa Annelida Clitellata Rhynchobdellida Glossiphoniidae Helobdella Helobdella robusta
28039962 28039962 PRJNA454503_P_NODE_33105_length_235_cov_1.494253_g32776_i0 PRJNA454503 33105 235 1.494253 3.51149455 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 162 2.0299999999999998e-48   NR CAH1780222.1 6347 g32776 i0 100 170.272340425532 78 0 99.6 0 234 1 112 189 CAH1780222.1 unnamed protein product [Owenia fusiformis] diamond 40014 162 1 Eukaryota Opisthokonta Metazoa Annelida Polychaeta Sabellida Oweniidae Owenia Owenia fusiformis
29886739 29886739 PRJNA454503_P_NODE_55831_length_211_cov_0.866667_g55502_i0 PRJNA454503 55831 211 0.866667 1.82866737 Capitella teleta 283909 Annelida Annelida 55.1 9.66e-7   NR ELU07327.1 283909 g55502 i0 71.4 0.497630331753554 35 9 48.3 1 108 209 8 42 ELU07327.1 hypothetical protein CAPTEDRAFT_104207 [Capitella teleta] diamond 105 55.1 1 Eukaryota Opisthokonta Metazoa Annelida Polychaeta   Capitellidae Capitella Capitella teleta

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;